Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G09
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0100 + 28348518-28348640,28349294-28349371,28349837-283499...    28   4.7  
01_05_0317 + 20822881-20822994,20824036-20824176,20824249-20825022     27   6.3  
01_01_0580 + 4305984-4307282,4308610-4308678                           27   8.3  

>11_08_0100 +
           28348518-28348640,28349294-28349371,28349837-28349977,
           28350040-28350116,28350221-28350370,28350467-28350680
          Length = 260

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -1

Query: 425 VVQWSSNCGPHVALERYLCGPRRIKQFW*TMTQNRVYIRLVNQVVKNDVIGCWRPTVVSH 246
           V   SS  GPHV LE Y+   R+I     ++++    I L    +  + +     TV+S 
Sbjct: 86  VAAHSSGLGPHVPLEEYIDNMRKIADHLKSLSEKTRVIFLSCPPLNEETLRKSTSTVLSE 145

Query: 245 I 243
           I
Sbjct: 146 I 146


>01_05_0317 + 20822881-20822994,20824036-20824176,20824249-20825022
          Length = 342

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -3

Query: 453 MVNTLSLLYRSTVVVKLRPACGPRTVFVRPATYQTVLVDN-DSKPSLHTISESGC 292
           ++  L ++  S VV      CG RT+  +P + Q  L D+ DS  S H +S+  C
Sbjct: 165 LIGELQVMCTSQVVNNKEIHCGDRTIGKKPTSVQ--LDDSVDSSDSEHGMSDDFC 217


>01_01_0580 + 4305984-4307282,4308610-4308678
          Length = 455

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 458 FSW*TLYLYYIVVQWSSNCGPHVALERYLCGPRRIKQ 348
           F+W +L +     +W  +  P + L  +LCGP+ + Q
Sbjct: 178 FAWSSLTMKKSGGEWVKSSIPRLPLPAHLCGPKHLFQ 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,135,328
Number of Sequences: 37544
Number of extensions: 222463
Number of successful extensions: 426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)