Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G09
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)                 29   2.8  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_21810| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00037)          28   3.7  
SB_53300| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_14014| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_33610| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  

>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
          Length = 399

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 270 TTYYVIFHNLIH*SYVNSVLSHCLPKL 350
           TT Y+  H LI  SYV+S ++ C P L
Sbjct: 230 TTRYISHHALIPTSYVSSHITRCFPLL 256


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 465 STFFMVNTLSLLYRSTVVVKLRPACGPRTVFVRPATYQTVLVDNDSKPSLHTIS 304
           ++F   + L ++  +  +  +R  C PRT+        T +V NDS   LH +S
Sbjct: 48  ASFLTTSRLEIIEIAIQIATIRKVCVPRTIQA-----STAVVGNDSVSELHNVS 96


>SB_21810| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00037)
          Length = 629

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 311 RLVNQVVKNDVIGCWRP 261
           RL N+ V+++  GCWRP
Sbjct: 152 RLYNRYVQHETFGCWRP 168


>SB_53300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 326 NRVYIRLVNQVVKNDVIGCWRP 261
           ++ Y   VNQV  +  +GCW P
Sbjct: 59  HKAYFGRVNQVASSITVGCWHP 80


>SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 188 YHFLTVFAVSFANNFLFFRYFI 123
           Y+ L++FAV FA +FL+F + I
Sbjct: 42  YYNLSIFAVFFAGSFLYFLWVI 63


>SB_14014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 323 RVYIRLVNQVVKNDVIGCWRP 261
           + Y   VNQV  +  +GCW P
Sbjct: 130 KAYFGRVNQVASSITVGCWHP 150


>SB_33610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -1

Query: 464 RHFSW*TLYLYYIVVQWSSNCGPHVALERYLCGPRRIKQF 345
           R  SW    + Y ++ W+   G    +E + C P    QF
Sbjct: 101 RRLSWDHCCILYSIIGWNCTVGQWARIEGHRCDPNPNDQF 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,640,503
Number of Sequences: 59808
Number of extensions: 280780
Number of successful extensions: 570
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)