Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G09
(494 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ... 30 0.80
U00047-3|AAA50689.2| 225|Caenorhabditis elegans Hypothetical pr... 29 2.4
U23453-4|AAC46756.2| 564|Caenorhabditis elegans Acid sphingomye... 28 3.2
Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z81468-2|CAN99666.1| 950|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z35595-8|CAA84640.1| 540|Caenorhabditis elegans Hypothetical pr... 27 5.7
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 27 5.7
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 27 7.5
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 7.5
U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical pr... 27 9.9
U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone... 27 9.9
U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone... 27 9.9
U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone... 27 9.9
AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear recep... 27 9.9
>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
protein R09A1.1 protein.
Length = 1121
Score = 30.3 bits (65), Expect = 0.80
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 383 ERYLCGPRRIKQFW*TMTQNRVYIRLVNQVVKNDVIGCW 267
+R LCGPR FW + +N+ + NQ + NDV W
Sbjct: 223 KRELCGPR----FWEILKENKPTFGMPNQYIFNDVNMMW 257
>U00047-3|AAA50689.2| 225|Caenorhabditis elegans Hypothetical
protein ZK418.5 protein.
Length = 225
Score = 28.7 bits (61), Expect = 2.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 191 FYHFLTVFAVSFANNFLFFRY 129
F+HF+ FA++FA F+ ++Y
Sbjct: 3 FFHFINCFALAFAPYFIVYKY 23
>U23453-4|AAC46756.2| 564|Caenorhabditis elegans Acid
sphingomyelinase protein 1 protein.
Length = 564
Score = 28.3 bits (60), Expect = 3.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 230 GHIDQCEIPLWASNNLLRHFSQ 295
G + +C+IP W N+L H ++
Sbjct: 201 GSVGKCDIPFWTVENMLSHINK 222
>Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical
protein K09C8.5 protein.
Length = 1328
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 194 VHRHTTNTFLVTGHIDQCEIPLWASNNLLRHFSQPDSLIVCKLGFESLSTKTV 352
VH N + GHI L+ SNNLL S+ + + L + LS ++
Sbjct: 28 VHCEGKNLTAIPGHIPIATTNLYFSNNLLNSLSKSNFQALPNLQYLDLSNNSI 80
>Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical
protein K09C8.5 protein.
Length = 1328
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 194 VHRHTTNTFLVTGHIDQCEIPLWASNNLLRHFSQPDSLIVCKLGFESLSTKTV 352
VH N + GHI L+ SNNLL S+ + + L + LS ++
Sbjct: 28 VHCEGKNLTAIPGHIPIATTNLYFSNNLLNSLSKSNFQALPNLQYLDLSNNSI 80
>Z81468-2|CAN99666.1| 950|Caenorhabditis elegans Hypothetical
protein C13B4.1b protein.
Length = 950
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Frame = -1
Query: 425 VVQWSSNCGPHVALERYLCGPRRIKQFW*TMTQNRVYIRLVNQVVKNDVI-----GCWRP 261
+ +W+ N G H+ + Q W + ++ VN + ND GC+ P
Sbjct: 332 IFKWNKNQGYHLMFAAGFSADTGLTQHWGSCVSILTFLDQVNNLGFNDATCGLTKGCFTP 391
Query: 260 TVVSHIDLCGP*REKCS*YDDEQFYHFLT 174
T + D C R S D Q + LT
Sbjct: 392 TDCT--DGCDDIRSSWSLLSDNQIHVELT 418
>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical
protein C13B4.1a protein.
Length = 1010
Score = 27.5 bits (58), Expect = 5.7
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Frame = -1
Query: 425 VVQWSSNCGPHVALERYLCGPRRIKQFW*TMTQNRVYIRLVNQVVKNDVI-----GCWRP 261
+ +W+ N G H+ + Q W + ++ VN + ND GC+ P
Sbjct: 332 IFKWNKNQGYHLMFAAGFSADTGLTQHWGSCVSILTFLDQVNNLGFNDATCGLTKGCFTP 391
Query: 260 TVVSHIDLCGP*REKCS*YDDEQFYHFLT 174
T + D C R S D Q + LT
Sbjct: 392 TDCT--DGCDDIRSSWSLLSDNQIHVELT 418
>Z35595-8|CAA84640.1| 540|Caenorhabditis elegans Hypothetical
protein C01G6.7 protein.
Length = 540
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 404 CGPHVALERYLCGPRRIKQFW 342
CGPH E ++ GP+ +K +W
Sbjct: 375 CGPHEIGELWIKGPQMMKGYW 395
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 380 VRGPHAGRSLTTTVLRYNRDKVFTMKNVDYYSEIDRML 493
+RG A L T ++R NR V ++N+ +ID L
Sbjct: 638 IRGNDARHLLMTKLMRTNRSNVIVLRNMVTPQDIDEFL 675
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = -3
Query: 399 PACGPRTVFVRPATYQTVLVDNDSKP-----SLHTISESGCE 289
P C TV +RP T T +++N+ SL+T++ +G E
Sbjct: 226 PECEKDTVLIRPQTVYTYILENEELKESEVRSLYTVNVNGQE 267
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 183 FLDRFCSFICKQFFIFSLFYITL*SKNK 100
FL+ C FI Q ++FS Y+TL N+
Sbjct: 2234 FLEE-CYFIVSQIYLFSKLYLTLNESNR 2260
>U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical
protein C02G6.1 protein.
Length = 980
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 395 HVALERYLCG---PRRIKQFW*TMTQNRVYIRLVNQVVK 288
H+ RYL P RIK+ T+T + + +R+V+Q K
Sbjct: 384 HILSSRYLLTKYEPERIKELLSTLTPSNMLVRVVSQKFK 422
>U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform c protein.
Length = 455
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 429 YRSTVVVKLRPACGPRTVFVRPATYQTVLVDNDSKPS-----LHTISESGCEK 286
+ +V+KL P C P+ + R ++ +KP+ +HT+ GC K
Sbjct: 298 FECDIVIKLEPDCTPKPIPERLNYPDGSFIEKGNKPANTWEEMHTMLIDGCYK 350
>U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform b protein.
Length = 434
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 429 YRSTVVVKLRPACGPRTVFVRPATYQTVLVDNDSKPS-----LHTISESGCEK 286
+ +V+KL P C P+ + R ++ +KP+ +HT+ GC K
Sbjct: 277 FECDIVIKLEPDCTPKPIPERLNYPDGSFIEKGNKPANTWEEMHTMLIDGCYK 329
>U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform a protein.
Length = 439
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 429 YRSTVVVKLRPACGPRTVFVRPATYQTVLVDNDSKPS-----LHTISESGCEK 286
+ +V+KL P C P+ + R ++ +KP+ +HT+ GC K
Sbjct: 282 FECDIVIKLEPDCTPKPIPERLNYPDGSFIEKGNKPANTWEEMHTMLIDGCYK 334
>AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear receptor
NHR-40 protein.
Length = 439
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = -3
Query: 429 YRSTVVVKLRPACGPRTVFVRPATYQTVLVDNDSKPS-----LHTISESGCEK 286
+ +V+KL P C P+ + R ++ +KP+ +HT+ GC K
Sbjct: 282 FECDIVIKLEPDCTPKPIPERLNYPDGSFIEKGNKPANTWEEMHTMLIDGCYK 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,170,549
Number of Sequences: 27780
Number of extensions: 224136
Number of successful extensions: 548
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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