Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G09
         (494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15060.1 68414.m01800 expressed protein                             29   1.3  
At1g55240.1 68414.m06309 expressed protein contains Pfam profile...    27   6.9  

>At1g15060.1 68414.m01800 expressed protein
          Length = 578

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 432 LYRSTVVVKLRPACGPRTVFVRPATYQTVLVDNDSKPSLHTISE 301
           L+RS   V   P+   RT  +RP  + +  V   +KPSL T  E
Sbjct: 25  LHRSISTVTTTPSFRHRTTLLRPRAFSSSSVKLPTKPSLCTADE 68


>At1g55240.1 68414.m06309 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 311

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 255 HCGPPTTYYVIFHNLIH*SYVNSVLSHCLPKLFDTS--RAAQIPFEG 389
           H G    Y+VI   +I  S + +++   LPK F  S  R++ I F+G
Sbjct: 146 HMGVEGQYHVILQVVIFVSLLTTIMGIFLPKSFLVSLVRSSSIAFQG 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,099,308
Number of Sequences: 28952
Number of extensions: 191693
Number of successful extensions: 367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)