Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G08
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   1.7  
03_05_0183 - 21681673-21682524                                         29   2.2  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   2.2  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   6.8  
05_06_0070 + 25342965-25343882,25343968-25344618                       27   6.8  
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38...    27   8.9  

>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 378 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 476
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 166 SQAFIATLLFDPSMSALPIIAKQNSPS 246
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 105 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 212
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 477 RLGWLRP*RRSGIIP 433
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>05_06_0070 + 25342965-25343882,25343968-25344618
          Length = 522

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +3

Query: 318 LLMARRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDML 497
           LL ARR DS  A   R       V+ +  A+GG  +    L +  + A  S A  GK + 
Sbjct: 139 LLSARRVDSFRAL--REEEVASFVNRIRAASGGGVVNLTELIVGLTHAVVSRAAFGKKLG 196

Query: 498 TVEP 509
            V+P
Sbjct: 197 GVDP 200


>06_01_0039 -
           386576-387098,387173-387468,387744-388067,388165-388276,
           388355-388482,388914-389048,389122-389250,389620-389787,
           389897-390019,390099-390227,390543-390866,390946-392901
          Length = 1448

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 393 HEPNVRNCGSSRTEQYYYRNDEPSVG 316
           H+ + +  GSS + Q  Y+  EPSVG
Sbjct: 436 HQASYKGFGSSTSHQSVYKGFEPSVG 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,726
Number of Sequences: 37544
Number of extensions: 290921
Number of successful extensions: 674
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)