Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G07
         (405 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   3.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   3.5  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 197  VGRKKTIKLAEEAGRKKTAI 256
            +GR+KTI   E A +KK  I
Sbjct: 1412 IGRRKTIHNLERAAQKKRQI 1431


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 197  VGRKKTIKLAEEAGRKKTAI 256
            +GR+KTI   E A +KK  I
Sbjct: 1412 IGRRKTIHNLERAAQKKRQI 1431


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 197  VGRKKTIKLAEEAGRKKTAI 256
            +GR+KTI   E A +KK  I
Sbjct: 1412 IGRRKTIHNLERAAQKKRQI 1431


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 197  VGRKKTIKLAEEAGRKKTAI 256
            +GR+KTI   E A +KK  I
Sbjct: 1412 IGRRKTIHNLERAAQKKRQI 1431


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 261 KNE-EYCNHRRKKTATTEGNRL 323
           KNE E  NH  K T   +GN+L
Sbjct: 337 KNEDETKNHYSKNTYNEQGNKL 358


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 261 KNE-EYCNHRRKKTATTEGNRL 323
           KNE E  NH  K T   +GN+L
Sbjct: 229 KNEDETKNHYSKNTYNEQGNKL 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,357
Number of Sequences: 336
Number of extensions: 1592
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)