Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G07
(405 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 27 0.84
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac... 27 1.5
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 1.9
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 2.6
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 26 2.6
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 2.6
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 25 4.5
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 25 4.5
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 25 5.9
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 24 7.8
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 27.5 bits (58), Expect = 0.84
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 122 SWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIKLA 226
+WK I A A R+ K +EG+ R +TI LA
Sbjct: 157 AWKATAIGRASKAAREYLEKNWKEGLSRDETIHLA 191
>SPAC1610.04 |mug99||meiotically upregulated gene
Mug99|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 1.5
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 119 RSWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIKLAEEAGRKKTAIA 259
RSWKK+ K GRK +L GR + A KK I+
Sbjct: 446 RSWKKEYWKELLEEGRKFERQLCRNVFGRSSFYVQQKTAAEKKEHIS 492
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 1.9
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 1 ARGSVEERRSLISXXXXXXXXXXEDYQGAG-KKRVSRLRAKELEEKDYQ 144
A S +E R LIS E+++ A K + RLR K EK YQ
Sbjct: 565 ADASYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQ 613
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 2.6
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 128 KKKTIKSA--EGAGRKKTNKLAEEGVGRKKTIKLAEEAGRKKTAIAEE*RILQPPKKEDC 301
KKK +K A E R++ +LAE+ + K EEA +K+ EE R+ + +K+
Sbjct: 600 KKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKR----EEQRLKREQEKKQQ 655
Query: 302 NHRRKQ 319
R++
Sbjct: 656 ELERQK 661
>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 286 EERRLQPPKETDYLWCVGQMIVLL 357
+ER L K T ++W GQ+IVL+
Sbjct: 12 KERVLPVVKNTQFVWFSGQVIVLI 35
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.8 bits (54), Expect = 2.6
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +2
Query: 8 GASKKEDHLSRKKKTSVPXXXXXXXXXXXXGFQDCGRRSWKKKTIKSAEGAGRKKTNK 181
G S +E+ +S+ +D G + KK SA G GR KTNK
Sbjct: 1299 GLSVEENRISKSPGLDSSDSGKSRKRSQSVDSEDAGSKKPVKKIAASASGRGR-KTNK 1355
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 4.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 317 VSFGGCSLLSSVVAVFFILRRLQSSFFQLLPQA**SSFFQLL 192
+SFGG +S +V +++ +R FFQ Q F +LL
Sbjct: 167 LSFGGLFFVSRIVVLYWRRQRELQQFFQRDSQLTSKRFLRLL 208
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 4.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 358 AAVQSFGQHTINNLFPSVVAVFFLRWLQYSSFF 260
A VQS QHT + L ++ ++ ++YS FF
Sbjct: 466 ATVQSISQHTHSELEDAIDSLGSFASVKYSGFF 498
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 320 SVSFGGCSLLSSVVAVFFILRRLQSSFFQLLP 225
SV F CSL V V F + ++S QLLP
Sbjct: 423 SVQFSNCSLTWPVSEVVFQVAVVKSLKLQLLP 454
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 18 RKKITYLEKKKQACREERGLPGSGKKE 98
RKK Y KKK A ++ P GKK+
Sbjct: 144 RKKNEYEMKKKGAQSKQTNAPKKGKKQ 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,285
Number of Sequences: 5004
Number of extensions: 28164
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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