Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G07
(405 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53623| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.022
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05) 29 1.1
SB_15121| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037) 29 1.4
SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 1.9
SB_56920| Best HMM Match : T-box (HMM E-Value=2.9e-13) 28 2.5
SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23) 28 2.5
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 28 2.5
SB_59666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.3
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82) 27 4.4
SB_32958| Best HMM Match : Transformer (HMM E-Value=2.9) 27 4.4
SB_5347| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_44813| Best HMM Match : Crystallin (HMM E-Value=0.26) 27 5.8
SB_15380| Best HMM Match : RA (HMM E-Value=0.11) 27 5.8
SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6) 27 7.7
SB_17919| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_11648| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_53623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 35.1 bits (77), Expect = 0.022
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -1
Query: 273 ILHSSAIAVFFLPASSASLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQLLRP 112
++H+ I VF +P L+VF +P L+VF +P DLIVF L+ P
Sbjct: 32 LVHTDLI-VFVIPLLYPDLVVFVIPLVHP-DLIVFVIPLVYPDLIVFVIPLVHP 83
Score = 34.3 bits (75), Expect = 0.038
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -1
Query: 255 IAVFFLPASSASLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQLLRP 112
+ VF +P LIVF +P + L+VF +P DL+VF L+ P
Sbjct: 13 LIVFVIPLVYPDLIVFVIPLVHT-DLIVFVIPLLYPDLVVFVIPLVHP 59
Score = 34.3 bits (75), Expect = 0.038
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -1
Query: 255 IAVFFLPASSASLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQLLRP 112
+ VF +P LIVF +P L+VF +P DLIVF L+ P
Sbjct: 49 LVVFVIPLVHPDLIVFVIPLVYP-DLIVFVIPLVHPDLIVFVIPLVYP 95
Score = 34.3 bits (75), Expect = 0.038
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 255 IAVFFLPASSASLIVFFLPTPS-SASLLVFFLPAPSADLIVFFFQLLRP 112
+ VF +P LIVF +P L+VF +P + D+IVF L+ P
Sbjct: 121 LIVFVIPLVYPDLIVFVIPLSLVHPDLIVFVIPLVNPDMIVFVIALVHP 169
Score = 33.9 bits (74), Expect = 0.051
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = -1
Query: 273 ILHSSAIAVFFLPASSASLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQLLRP 112
++H I VF +P LIVF +P L+VF +P DLIVF L+ P
Sbjct: 56 LVHPDLI-VFVIPLVYPDLIVFVIPLVHP-DLIVFVIPLVYPDLIVFVIPLVYP 107
Score = 33.5 bits (73), Expect = 0.067
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -1
Query: 255 IAVFFLPASSASLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQLLRP 112
+ VF +P LIVF +P L+VF +P DLIVF L+ P
Sbjct: 73 LIVFVIPLVHPDLIVFVIPLVYP-DLIVFVIPLVYPDLIVFVIPLVYP 119
Score = 33.5 bits (73), Expect = 0.067
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = -1
Query: 273 ILHSSAIAVFFLPASSASLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQLLRP 112
++H I VF +P LIVF +P L+VF +P DLIVF L+ P
Sbjct: 80 LVHPDLI-VFVIPLVYPDLIVFVIPLVYP-DLIVFVIPLVYPDLIVFVIPLVYP 131
Score = 31.1 bits (67), Expect = 0.36
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = -1
Query: 249 VFFLPASSASLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQLLRP 112
VF + LIVF +P L+VF +P DLIVF LL P
Sbjct: 3 VFVIALVHPYLIVFVIPLVYP-DLIVFVIPLVHTDLIVFVIPLLYP 47
Score = 29.9 bits (64), Expect = 0.82
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 249 VFFLPASSASLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQLLRP 112
VF + LIVF +P + ++VF +P DLIV LL P
Sbjct: 161 VFVIALVHPDLIVFVIPLVNP-DMIVFVIPLVHTDLIVLVIPLLYP 205
Score = 29.5 bits (63), Expect = 1.1
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -1
Query: 255 IAVFFLPASSA--SLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQLLRPQS---*NPLF 91
+ VF +P S LIVF +P + ++VF + DLIVF L+ P PL
Sbjct: 133 LIVFVIPLSLVHPDLIVFVIPLVNP-DMIVFVIALVHPDLIVFVIPLVNPDMIVFVIPLV 191
Query: 90 SRSLVVLFL 64
L+VL +
Sbjct: 192 HTDLIVLVI 200
>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
Length = 889
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/77 (22%), Positives = 36/77 (46%)
Frame = +1
Query: 91 KKRVSRLRAKELEEKDYQVCRRSWKKED*QACGRRSWKKEDY*ACGRSWKKEDCNRRRMK 270
+K ++RLRA + KD Q + + + + Q R W++++ + + E+ R+ +
Sbjct: 381 EKEIARLRALQERAKDVQAEKDALRAKRNQEEAEREWRRKEREEAEKQKQTEEMLRQARE 440
Query: 271 NTATTEERRLQPPKETD 321
N +E L + D
Sbjct: 441 NQVKNKEHFLAVQAKRD 457
>SB_15121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -1
Query: 255 IAVFFLPASSA--SLIVFFLPTPSSASLLVFFLPA--PSADLIVFFFQLLRP 112
I +F+LP + +F+LPT +V +LP P +++F+ L P
Sbjct: 220 IVIFYLPTLRPVMRIAIFYLPTLRPVMRIVIYLPTLLPVMRIVIFYLPTLLP 271
>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
Length = 722
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 97 RVSRLRAKELEEKDYQVCRRSWKKED*Q-ACGRRSWKKEDY*ACGRSWKKEDCNRRRMK 270
+ R R KELE +K D AC RR+ ED R WK+E+ R K
Sbjct: 289 QTERERLKELESMQQSTQNEGEEKGDAVIACIRRAKHYEDTPTQSRKWKREELEVSRQK 347
>SB_503| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 979
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 291 KKTATTEGNRLFMVCWPNDCTAAVSCEVYGSVED 392
+K T E L V WP+ C V+C V ++D
Sbjct: 919 RKKKTHEVRHLHHVSWPDKCIPEVACSVLDLLDD 952
>SB_56920| Best HMM Match : T-box (HMM E-Value=2.9e-13)
Length = 263
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 184 CGRRSWKKEDY*ACGRSWKKEDCNRRRMKNTATTEERRLQPPK 312
CG+ K ED G + + DC RR+++NTA L P+
Sbjct: 33 CGQVDDKSEDE---GHTDNETDCKRRKLENTAGRSASELTRPE 72
>SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23)
Length = 880
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 98 GFQDCGRRSWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIKLAEEAGRKKTAI 256
G +D + + T KS++ G+KKTN KKTIK A+E +++ A+
Sbjct: 214 GEEDTDQAEEPEWTNKSSKATGKKKTNT-------SKKTIKNAKEPKKRRNAL 259
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = -1
Query: 276 SILH----SSAIAVFFLPASSASLIVFF--LPTPSSASLLVFFLPAPSADLIVFFFQLLR 115
SI+H SS+I + P+SS+S+I+ PSS+S ++ P+ S +I+
Sbjct: 194 SIIHHHPSSSSIIIHHHPSSSSSIIIIIHHHHHPSSSSSIIIHHPSSSIIIIIIIHHHHH 253
Query: 114 PQS 106
P S
Sbjct: 254 PSS 256
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -1
Query: 264 SSAIAVFFLPASSASLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQLLRPQS 106
SS+I + SS+ +I+ PSS+S+++ PS+ I+ P S
Sbjct: 108 SSSIIIIHHHPSSSIIIIIHHHHPSSSSIIIIHHHHPSSSSIIIIHHHHHPSS 160
>SB_59666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 76 YQGAGKKRVSRLRAKELEEKDYQVCRRSWKKED*QACGRRS 198
Y AG+++ SR K E+ DY + K QAC R S
Sbjct: 98 YANAGRRKRSRSADKREEDSDYDGDTKEEPKTKIQACARVS 138
>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
Length = 896
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 387 RRSRRLHKKLQQYNHL 340
RR++RL KKL++Y HL
Sbjct: 398 RRNKRLRKKLKEYTHL 413
>SB_32958| Best HMM Match : Transformer (HMM E-Value=2.9)
Length = 253
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/68 (23%), Positives = 26/68 (38%)
Frame = +1
Query: 202 KKEDY*ACGRSWKKEDCNRRRMKNTATTEERRLQPPKETDYLWCVGQMIVLLQFLVKSTG 381
+K + +C R W + +RR + A P E++ W +I + LV G
Sbjct: 120 RKRHFVSCSRRWPRGRASRRDARACAPMMPSAHTPVPESNSAWSASSVIGVAGLLVSLIG 179
Query: 382 ASKTERSL 405
R L
Sbjct: 180 LYIRRREL 187
>SB_5347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 21 KKITYLEKKKQACREERGLPGSGKKEGFKIA 113
K+ITY E KQ C+ L G K+G ++A
Sbjct: 231 KQITYGELLKQVCKFANVLESKGVKKGDRVA 261
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 27.5 bits (58), Expect = 4.4
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 116 RRSWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIK-LAEEAGRKKTAIAEE*RILQPPKK 292
+R K+K + +++ + ++ + + K I L E+A +KK + R L+ KK
Sbjct: 789 KREEKEKRVAELRAERQRELMEKKKQLLEKDKLISTLTEKAKKKKEREEDAKRRLRLQKK 848
Query: 293 EDCNHRRKQ 319
D + RRKQ
Sbjct: 849 ADLDARRKQ 857
>SB_44813| Best HMM Match : Crystallin (HMM E-Value=0.26)
Length = 688
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 124 LEEKDYQVCRRSWKKED*QACGRRSWKKE 210
L E+D C+ S+ +A GRR W KE
Sbjct: 288 LAERDKLPCKNSYDDSVIRASGRRGWLKE 316
>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
Length = 2124
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 39 EKKKQACREERGLPGSGKKEGFKIAGEG 122
E +K+ +E+ G +KEG+K GEG
Sbjct: 1167 ESEKEGWKEKEGEVDESEKEGWKTEGEG 1194
>SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 72 GLPGSGKKEGFKIAGEGAGRKRLS 143
G PGSGK E K+ E +GR +S
Sbjct: 111 GGPGSGKTELAKLLAESSGRTHIS 134
>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
Length = 697
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -1
Query: 357 QQYNHLANTP*IICFLRWLQSSFFGGCSILHSSAIAVFFLPASSA--SLIVFFLPTPSSA 184
Q YN L+N P I L W + + F S + A+ V L A+ ++V +PS
Sbjct: 203 QPYNVLSNAPVFIVQLSWFRPTSFDEVSAVVCVALRVAMLCAACIRDDVLVIGTDSPSPG 262
Query: 183 S 181
S
Sbjct: 263 S 263
>SB_17919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +1
Query: 88 GKKRVSRLRAKELEEKDYQVCRRSWKKED*QACGRRSWKKEDY*ACG-----RSWKKEDC 252
GKK V + + K +E+K + + + KK+ Q ++ ++ D CG SW+K C
Sbjct: 30 GKKTVEKKKEKIIEDKTFGLKNKKGKKQ--QTFVKQVTQQGD--RCGPLRYYASWRKGGC 85
Query: 253 NRRRM 267
RR+
Sbjct: 86 AARRL 90
>SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 72 GLPGSGKKEGFKIAGEGAGRKRLS 143
G PGSGK E K+ E +GR +S
Sbjct: 345 GGPGSGKTELAKLLAESSGRTHIS 368
>SB_11648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 285 GGCSILHSSAIAVFFLPASSASLIVFFLPTPSSASLLVFFLPAPSA 148
G C +L A+ FF+P+ S I F T +++VF L P A
Sbjct: 73 GPCLMLSILAVLGFFIPSESGERIGFV--TTLLLAMMVFLLLIPDA 116
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,425,420
Number of Sequences: 59808
Number of extensions: 220406
Number of successful extensions: 875
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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