Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G07
         (405 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC052279-1|AAH52279.1|  307|Homo sapiens leucine rich repeat con...    29   4.5  
BC017168-1|AAH17168.1|  307|Homo sapiens leucine rich repeat con...    29   4.5  
AK023303-1|BAB14516.1|  249|Homo sapiens protein ( Homo sapiens ...    29   4.5  
BC018941-1|AAH18941.1|  137|Homo sapiens transmembrane protein 1...    29   7.8  
BC011760-1|AAH11760.1|  137|Homo sapiens transmembrane protein 1...    29   7.8  

>BC052279-1|AAH52279.1|  307|Homo sapiens leucine rich repeat
           containing 59 protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +1

Query: 85  AGKKRVSRLRAKELEEKDYQVCRRSWKKED*QACGRRSWKKEDY*ACGRSWKKEDCNRRR 264
           A KKR ++ RAKE +E++ +   ++ +KE      RR  + +   A  R  +K+      
Sbjct: 169 AEKKREAKQRAKEAQERELRKREKAEEKE------RRRKEYDALKAAKREQEKKPKKEAN 222

Query: 265 MKNTATTEER-RLQPPKETDYLWCVGQMIVLL 357
               + +  R R  PP++    W V ++++LL
Sbjct: 223 QAPKSKSGSRPRKPPPRKHTRSWAVLKLLLLL 254


>BC017168-1|AAH17168.1|  307|Homo sapiens leucine rich repeat
           containing 59 protein.
          Length = 307

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +1

Query: 85  AGKKRVSRLRAKELEEKDYQVCRRSWKKED*QACGRRSWKKEDY*ACGRSWKKEDCNRRR 264
           A KKR ++ RAKE +E++ +   ++ +KE      RR  + +   A  R  +K+      
Sbjct: 169 AEKKREAKQRAKEAQERELRKREKAEEKE------RRRKEYDALKAAKREQEKKPKKEAN 222

Query: 265 MKNTATTEER-RLQPPKETDYLWCVGQMIVLL 357
               + +  R R  PP++    W V ++++LL
Sbjct: 223 QAPKSKSGSRPRKPPPRKHTRSWAVLKLLLLL 254


>AK023303-1|BAB14516.1|  249|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13241 fis, clone OVARC1000557. ).
          Length = 249

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 255 SPKNEEYCNHRRKKTATTEGNRLFMVCWPNDCTAAVS 365
           SP++   C H RK    +  +R  +V   + CTAA S
Sbjct: 99  SPRSSSCCEHHRKAAPESRRSRQGLVVRSSGCTAATS 135


>BC018941-1|AAH18941.1|  137|Homo sapiens transmembrane protein 113
           protein.
          Length = 137

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 225 ASLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQL 121
           ASL++ F  + S +SLL+F      A LIVF   L
Sbjct: 100 ASLLIVFATSISESSLLIFSFQKTEAKLIVFAVSL 134


>BC011760-1|AAH11760.1|  137|Homo sapiens transmembrane protein 113
           protein.
          Length = 137

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 225 ASLIVFFLPTPSSASLLVFFLPAPSADLIVFFFQL 121
           ASL++ F  + S +SLL+F      A LIVF   L
Sbjct: 100 ASLLIVFATSISESSLLIFSFQKTEAKLIVFAVSL 134


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,213,768
Number of Sequences: 237096
Number of extensions: 1056357
Number of successful extensions: 3354
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3324
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2985693880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)