Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G07
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine re...    32   0.18 
U50066-1|AAA93437.2|  378|Caenorhabditis elegans Resistance to i...    31   0.42 
Z70307-12|CAA94340.1|  405|Caenorhabditis elegans Hypothetical p...    29   1.7  
Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF099920-2|AAL32226.2|  437|Caenorhabditis elegans Hypothetical ...    28   2.9  
U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U41016-7|ABC71807.1|  476|Caenorhabditis elegans Sensory axon gu...    27   5.1  
U41016-6|ABC71808.1|  474|Caenorhabditis elegans Sensory axon gu...    27   5.1  
AF275634-1|AAF91417.1|  469|Caenorhabditis elegans SAX-1 Ndr pro...    27   5.1  
Z81136-5|CAB03460.2|  733|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z49886-2|CAA90051.1|  268|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>AF039046-9|AAX22285.1|  341|Caenorhabditis elegans Serpentine
           receptor, class j protein23, isoform b protein.
          Length = 341

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -1

Query: 318 CFLRWLQSSF-FG-GCSILHSSAIAVFFLPASSASLIVFFLPT--PSSASLLVFFLPAPS 151
           C   W Q  F F  G ++ H+S++ V   P    + I+FF+PT       LL F  P  S
Sbjct: 263 CLASWYQPVFGFELGRAVYHTSSVLVSAFPFFDPTAIIFFVPTFRKRCKELLCFNFPIKS 322

Query: 150 A 148
           A
Sbjct: 323 A 323


>U50066-1|AAA93437.2|  378|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 3 protein.
          Length = 378

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = +2

Query: 131 KKTIKSAEGAGRKKTNKLA---EEGVGRKKTIKLAEEAGRKKTAIAEE*RILQPPKKEDC 301
           KK+  S++  G++K    +   EE  G +++ K+AE+A  +   I  E R     +K+D 
Sbjct: 309 KKSKSSSQSVGKRKNRPKSTSEEEDEGEEESRKVAEDAEEEGIDIDSEIREHAEKEKKDK 368

Query: 302 NHRRKQ 319
           N RR++
Sbjct: 369 NVRRRR 374


>Z70307-12|CAA94340.1|  405|Caenorhabditis elegans Hypothetical
           protein C39E9.11 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 116 RRSWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIKL 223
           RR  +KK +K A+   RKK  KLA++ +  +K  K+
Sbjct: 74  RRKLEKKALKKAQKEERKKEKKLAKKAMKVEKIPKI 109


>Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical
           protein C08F8.6 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 98  GFQDCGRRSWKKKTIKSAEGAGRKKT---NKLAEEGVGRKKTIKLAEEAGRKK 247
           G  D   +  KKK ++ AEG   K+T    K+++E V  KK  K  E+   KK
Sbjct: 316 GVVDQTEKVIKKKEVELAEGKSHKETKEVTKVSKEIVEEKKEEKKEEKKEEKK 368


>AF099920-2|AAL32226.2|  437|Caenorhabditis elegans Hypothetical
           protein H06H21.6 protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 70  EDYQGAGKKRVSRLRAKELEEKDYQV 147
           E  Q AGK+R+  +  +ELEE+  QV
Sbjct: 68  EPQQNAGKRRIQMIAKRELEEERRQV 93


>U41533-1|AAA83162.2|  357|Caenorhabditis elegans Hypothetical
           protein R05F9.7 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 232 SWKKEDCNRRRMKNTATTEERRLQPP---KETDYLWCVGQMIVLLQFLV 369
           SWK E  N R+MKN   T  ++ Q     K   YL  +  M+V L F V
Sbjct: 221 SWKAE--NLRKMKNVNYTLSKKFQVEENVKIIKYLQVMSSMLVFLIFFV 267


>U41016-7|ABC71807.1|  476|Caenorhabditis elegans Sensory axon
           guidance protein 1,isoform a protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 241 KEDCNRRRMKNTATTEERRLQPPKETDYL 327
           +ED + R + +    E+R++   KETDYL
Sbjct: 47  EEDISARGLSDEEKEEKRKIHHSKETDYL 75


>U41016-6|ABC71808.1|  474|Caenorhabditis elegans Sensory axon
           guidance protein 1,isoform b protein.
          Length = 474

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 241 KEDCNRRRMKNTATTEERRLQPPKETDYL 327
           +ED + R + +    E+R++   KETDYL
Sbjct: 47  EEDISARGLSDEEKEEKRKIHHSKETDYL 75


>AF275634-1|AAF91417.1|  469|Caenorhabditis elegans SAX-1 Ndr
           protein kinase protein.
          Length = 469

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 241 KEDCNRRRMKNTATTEERRLQPPKETDYL 327
           +ED + R + +    E+R++   KETDYL
Sbjct: 40  EEDISARGLSDEEKEEKRKIHHSKETDYL 68


>Z81136-5|CAB03460.2|  733|Caenorhabditis elegans Hypothetical
           protein W02B8.4 protein.
          Length = 733

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 143 KSAEGAGRKKTNKLAEEGVGRKKTIKLAEEA 235
           KSAE  G+K+   L E  +G  KT++ A+ +
Sbjct: 182 KSAEKTGKKRRRVLKESWLGSFKTVRRAKRS 212


>Z49886-2|CAA90051.1|  268|Caenorhabditis elegans Hypothetical
           protein C06A1.2 protein.
          Length = 268

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 300 ATTEGNRLFMVCWPNDCTAAVSCEVY 377
           AT E +R+ +  WP +CT    CE Y
Sbjct: 167 ATVE-SRMTLCGWPTECTELSCCESY 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,684,186
Number of Sequences: 27780
Number of extensions: 171562
Number of successful extensions: 682
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)