Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G07
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   2.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   4.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   5.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   5.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.3  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = +2

Query: 119 RSWKKKTIKSAEGAGRKKTNKLAEEG------VGRKKTIKLAEEAGRKK 247
           +S K+  I ++      KTN +  EG      VG K  + + ++ G KK
Sbjct: 267 KSGKRNIIDNSAQKTESKTNNIVVEGVSFGQSVGLKDDLDIDDDVGEKK 315


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 164  RKKTNKLAEEGVGRKKTIKLAEEAGRKKTAIAE 262
            R++  ++ E GV  K  + L+ E+G KKT + +
Sbjct: 1017 RQEKEEMVELGVLDKIFLALSRESGFKKTYVQD 1049


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 368 TRNCSSTIIWPTHH 327
           T NC  T IW  HH
Sbjct: 53  TTNCWVTQIWTDHH 66


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 192 SSASLLVFFLPAPSADLIVFFFQLL 118
           S  S+LVF+LP+ S + +     +L
Sbjct: 251 SFLSVLVFYLPSDSGEKVSLSISIL 275


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 151 RRSWKKED*QACGRRSWKKE 210
           RRSW   + Q C   S  KE
Sbjct: 352 RRSWVTRESQICNNSSSDKE 371


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 169 ED*QACGRRSWKKEDY*ACGRSWKKEDCNRRRMKNTATTEERRLQ 303
           ED +   R S++ +   +C R   +E    RR       EE+ L+
Sbjct: 235 EDSRHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLR 279


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 97  RVSRLRAKELEEKDYQVCRRSW 162
           R SRLR  E   +DY++    W
Sbjct: 62  RDSRLRLPENMSEDYRILDVDW 83


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 319 LFPSVVAVFFLRWLQYSSFFGDC 251
           L+P V + +    +Q + F GDC
Sbjct: 373 LYPEVSSTYTGFGIQSTDFVGDC 395


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 192 SSASLLVFFLPAPSADLIVFFFQLL 118
           S  ++LVF+LP+ S + +     +L
Sbjct: 255 SFLTVLVFYLPSDSGEKVSLSISIL 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,882
Number of Sequences: 438
Number of extensions: 1966
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)