Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G07
(405 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g50310.1 68418.m06229 kelch repeat-containing protein similar... 29 0.89
At4g34400.1 68417.m04886 transcriptional factor B3 family protei... 29 0.89
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 29 1.2
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 1.6
At4g27980.1 68417.m04014 expressed protein 28 2.1
At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid t... 27 3.6
At1g16680.1 68414.m01997 DNAJ heat shock N-terminal domain-conta... 27 3.6
At1g05920.1 68414.m00621 hypothetical protein contains Pfam prof... 27 4.8
At5g30495.2 68418.m03660 expressed protein 27 6.3
At5g30495.1 68418.m03659 expressed protein 27 6.3
At5g20610.1 68418.m02448 expressed protein 26 8.3
At5g06960.2 68418.m00788 bZIP family transcription factor (OBF5)... 26 8.3
At5g06960.1 68418.m00787 bZIP family transcription factor (OBF5)... 26 8.3
At3g27080.1 68416.m03387 mitochondrial import receptor subunit T... 26 8.3
At3g18310.1 68416.m02330 expressed protein 26 8.3
At2g17710.1 68415.m02052 expressed protein 26 8.3
>At5g50310.1 68418.m06229 kelch repeat-containing protein similar to
Kelch repeats protein 3 (SP:Q08979) [Saccharomyces
cerevisiae]; contains Pfam PF01344: Kelch motif (6
repeats)
Length = 666
Score = 29.5 bits (63), Expect = 0.89
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +2
Query: 113 GRRSWKKKTIKSAEGAGRKKTNKLAEEGVGRKKTIKLAEEAGRKKTAIAEE*RILQPPKK 292
G+ ++KT K+ E R++ KL+ E + + +E +KK EE + P +
Sbjct: 11 GKEKTERKTAKADEKKARREGKKLSPEDDIDAILLNIQKEEAKKKEVHVEE-NVAAPSPR 69
Query: 293 EDCN 304
+C+
Sbjct: 70 SNCS 73
>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 389
Score = 29.5 bits (63), Expect = 0.89
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 97 RVSRLRAKELEEKDYQVCRRSWKKED*QACGRRSWKKEDY*AC 225
R +L AK + KD +VC + W + C R KKED C
Sbjct: 329 RFGKLSAKTAKWKDQRVCIKRWMR----ICKRNKLKKEDRILC 367
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 157 SWKKED*QACGRRSWKKEDY*ACGRSWKKED 249
SW K++ A G SW K+D G SW K+D
Sbjct: 1179 SWGKQN-DAGGGSSWGKQDSGGDGSSWGKQD 1208
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 157 SWKKED*QACGRRSWKKEDY*ACGRSWKKED 249
SW K+ A G SW K+D G SW K+D
Sbjct: 1228 SWGKQS-DAGGGSSWGKQDGGGGGSSWGKQD 1257
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 157 SWKKED*QACGRRSWKKEDY*ACGRSWKKED 249
SW K+D G SW KE+ G SW K+D
Sbjct: 1131 SWGKQDGDG-GGSSWGKENDAGGGSSWGKQD 1160
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 157 SWKKED*QACGRRSWKKEDY*ACGRSWKKED 249
SW K++ + G SW K++ G SW K+D
Sbjct: 1166 SWGKQNDGSGGGSSWGKQNDAGGGSSWGKQD 1196
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 28.7 bits (61), Expect = 1.6
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Frame = +1
Query: 91 KKRVSRLRAKELE--EKDYQVCRRSWKKED*QACGRRSWKKEDY*ACGRSWKKE------ 246
+ R R + ++LE E+ YQ R W++ + + R ++KE R KKE
Sbjct: 459 RSRKEREQRRKLEDAERAYQTRLRQWERREREKEKERQYEKEKEKEKERKRKKEIRYEEE 518
Query: 247 -----DCNRRRMKNTATTEERRLQPPKETDYL 327
D +RRR A E RR Q ++ D L
Sbjct: 519 EEEDDDDSRRRWHRAALDERRRRQLREKEDDL 550
>At4g27980.1 68417.m04014 expressed protein
Length = 565
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 164 RKKTNKLAEEGVGRKKTIKLAEEAGRKKTA-IAEE*RILQPPKKEDCNHRRKQ 319
R +T + EE R+K ++ EEA ++KTA + + L+ KE+ R++
Sbjct: 166 RAETERRNEESEAREKDLRALEEAVKEKTAELKRKEETLELKMKEEAEKLREE 218
>At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein GI:2627141 from (Picea abies); contains
Pfam profile PF00234 Protease inhibitor/seed storage/LTP
family
Length = 180
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 368 TRNCSSTIIWPTHHK*SVSFGGCSLLSSVVAVFF 267
T N + + PT +++FGG S S+VVA F
Sbjct: 146 TGNAAPSTAKPTSSAPAINFGGLSFASAVVATLF 179
>At1g16680.1 68414.m01997 DNAJ heat shock N-terminal
domain-containing protein / S-locus protein, putative
similar to S-locus protein 5 GI:6069485 from [Brassica
rapa]; contains Pfam profile PF00226 DnaJ domain
Length = 496
Score = 27.5 bits (58), Expect = 3.6
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -1
Query: 318 CFLRWLQSSF-FGGCSILHSSAIAVFFLPASSASLIVFFLPTPSSASLLVFFLPAPSADL 142
C LR QSS FG ++L + FL +S S +V+ L +A +V +L
Sbjct: 50 CILRGFQSSVKFGSAALL--LIMWSCFLSLTSVSCLVYVLLGMGAAGAVVLYLGRTPGIF 107
Query: 141 IVFFFQLL 118
IV F +L
Sbjct: 108 IVGLFGIL 115
>At1g05920.1 68414.m00621 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 315
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 128 KKKTIKSA-EGAGRKKTNKLAEEGVGRKKTIKLAEEAGRKKT 250
K KT+ EG G+++ ++ + + KT+ +A RK+T
Sbjct: 58 KAKTVAQVKEGKGKRREEMISRDNRTKPKTVAQVRDAKRKRT 99
>At5g30495.2 68418.m03660 expressed protein
Length = 196
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 112 RAKELEEKDYQVCRRSWKKED*QACGRR 195
+ KE+EEK V + WKK+ Q ++
Sbjct: 165 KVKEIEEKSRAVTNKKWKKKGNQTTNKK 192
>At5g30495.1 68418.m03659 expressed protein
Length = 196
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 112 RAKELEEKDYQVCRRSWKKED*QACGRR 195
+ KE+EEK V + WKK+ Q ++
Sbjct: 165 KVKEIEEKSRAVTNKKWKKKGNQTTNKK 192
>At5g20610.1 68418.m02448 expressed protein
Length = 1164
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 70 EDYQGAGKKRVSRLRAKELEEKDYQVCRRSW 162
E+YQ + RVS RAK LE + + R W
Sbjct: 639 EEYQLEAQARVSHPRAKMLEGLETESLMREW 669
>At5g06960.2 68418.m00788 bZIP family transcription factor (OBF5)
identical to bZIP family transcription factor (OBF5)
GI:414615 from [Arabidopsis thaliana]
Length = 330
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 9 ERRRKKITYLEKKKQACREERGLPGSGKKEGFKIAGEGA 125
E R K+T LE++ Q R++ S + AG+GA
Sbjct: 73 ENSRLKLTQLEQELQRARQQGVFISSSGDQAHSTAGDGA 111
>At5g06960.1 68418.m00787 bZIP family transcription factor (OBF5)
identical to bZIP family transcription factor (OBF5)
GI:414615 from [Arabidopsis thaliana]
Length = 330
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 9 ERRRKKITYLEKKKQACREERGLPGSGKKEGFKIAGEGA 125
E R K+T LE++ Q R++ S + AG+GA
Sbjct: 73 ENSRLKLTQLEQELQRARQQGVFISSSGDQAHSTAGDGA 111
>At3g27080.1 68416.m03387 mitochondrial import receptor subunit
TOM20-3 / translocase of outer membrane 20 kDa subunit
3 (TOM20-3) identical to mitochondrial import receptor
subunit TOM20-3 SP:P82874 from [Arabidopsis thaliana]
Length = 202
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 286 EERRLQPPKETDYLWCVGQMIVLLQFLVKSTGASK 390
EE L PK+ + +WC+G FL +K
Sbjct: 65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAK 99
>At3g18310.1 68416.m02330 expressed protein
Length = 873
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 207 FLPTPSSASLLVFFLPAPSADLIVF 133
FLP PS S+LVFF + D I F
Sbjct: 107 FLPFPSKNSVLVFFPTGTNLDQIGF 131
>At2g17710.1 68415.m02052 expressed protein
Length = 152
Score = 26.2 bits (55), Expect = 8.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 70 EDYQGAGKKRVSRLRAKELEEKDYQVCRRSWKKED 174
ED+ + K +R+RA+ L ++DY+ S ED
Sbjct: 57 EDHLYSAIKAAARVRARNLSDEDYKRFEESLDMED 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,332,008
Number of Sequences: 28952
Number of extensions: 163780
Number of successful extensions: 642
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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