BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0002_G06 (535 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 33 0.15 SB_48061| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19 SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19 SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016) 32 0.34 SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 32 0.34 SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24) 31 0.45 SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45 SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 31 0.45 SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) 31 0.78 SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0 SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 30 1.4 SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) 30 1.4 SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6) 29 2.4 SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4 SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4 SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 29 2.4 SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4 SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 29 3.2 SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 28 4.2 SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2 SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 28 4.2 SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2 SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8) 28 4.2 SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2 SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2 SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 28 4.2 SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3) 28 5.5 SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 28 5.5 SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57) 28 5.5 SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5 SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3 SB_51860| Best HMM Match : ShTK (HMM E-Value=1.5e-09) 27 7.3 SB_28618| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3 SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 27 7.3 SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3 SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3 SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1) 27 7.3 SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016) 27 7.3 SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6 SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6 SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 27 9.6 SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 27 9.6 SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6 SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 27 9.6 SB_1061| Best HMM Match : Extensin_2 (HMM E-Value=2) 27 9.6 >SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) Length = 662 Score = 33.1 bits (72), Expect = 0.15 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +1 Query: 367 PANLQNHLPPQDLPATPHPVPVQ-PILVQQRAD 462 P N+Q H+PP +P P+ +P Q P ++ D Sbjct: 53 PGNIQGHVPPPQMPMAPNQMPPQNPPMIDSNGD 85 >SB_48061| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 307 Score = 32.7 bits (71), Expect = 0.19 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Frame = +1 Query: 238 NMSSDKKTRIPE-PPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPAT 414 ++ + T IP+ PP P H + PP +LP +A + P +LQ PP P Sbjct: 136 SLPTSATTPIPQIPPPPTYLHPSQYPPSPPPWELPRVPSANATLPPHLQYGPPPPTSPGL 195 Query: 415 PHPVPVQPILVQQRADPAAETEKFSPAIP 501 + Q + QR+ P E F P Sbjct: 196 CN----QGYNLHQRSQPVHSMEPFPDQPP 220 >SB_5433| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1554 Score = 32.7 bits (71), Expect = 0.19 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 355 VSPTPANLQNHLPPQDLPATPHPVPVQPILVQQRADPAAETEKFSPA 495 +SP A +Q L +P T P P P L+++R A K SPA Sbjct: 450 ISPIWAAIQKELNAFGIPTTAKPTPALPDLIKERLALAGAAGKTSPA 496 >SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016) Length = 419 Score = 31.9 bits (69), Expect = 0.34 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 8/101 (7%) Frame = +1 Query: 241 MSSDKKTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHL------PPQD 402 + SDK++ PP P G N SS PP + + PTP+ Q++ PP+ Sbjct: 315 VQSDKQS----PPTPSRGQSNKQSSPTPPPRQSD--KQSPPTPSRGQSNKQSSPTPPPRQ 368 Query: 403 LPATPHPVPVQPILVQQRA--DPAAETEKFSPAIPWSKGEA 519 P+P + +Q + P +++K SP IP S+G++ Sbjct: 369 SDKQSPPIPSRGQSNKQSSPTPPPRQSDKQSPPIP-SRGQS 408 >SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) Length = 1258 Score = 31.9 bits (69), Expect = 0.34 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = +1 Query: 259 TRIPEPPAPISGHGNLLSSVAP---PSQLPNFITAVSPTPANL--QNHLPPQDLPATPHP 423 T++P PAPI+ SS P P QLP+ + P+ LP P+TP P Sbjct: 246 TQLPSTPAPINPTPINPSSYQPNSHPPQLPSTQLPSTQLPSTQLPSTQLPSTQFPSTPAP 305 Query: 424 VPVQPI 441 + PI Sbjct: 306 INPTPI 311 Score = 31.5 bits (68), Expect = 0.45 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = +1 Query: 259 TRIPEPPAPISGHGN---LLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVP 429 T+ P P PI+ + + LLS++ P + P A++PTP N P P++ P Sbjct: 169 TQAPINPTPINSNSHQLQLLSTLIPSTTAPINPAAINPTPINPTPINPTPINPSSHQPSC 228 Query: 430 VQP 438 QP Sbjct: 229 YQP 231 Score = 27.9 bits (59), Expect = 5.5 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 16/66 (24%) Frame = +1 Query: 289 SGHGNLLSSVAP----PS-QLPNFITAVSPTPANLQNH--------LPPQDLPATP---H 420 S H N L AP PS QLP+ ++PTP N +H +P P P + Sbjct: 146 STHNNALQHSAPITQLPSTQLPSTQAPINPTPINSNSHQLQLLSTLIPSTTAPINPAAIN 205 Query: 421 PVPVQP 438 P P+ P Sbjct: 206 PTPINP 211 Score = 27.5 bits (58), Expect = 7.3 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Frame = +1 Query: 277 PAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPV---PVQPILV 447 P PI+ + + P S P+ S P + Q L LP+TP P+ P+ P Sbjct: 206 PTPINPTPINPTPINPSSHQPSCYQPSSHQPNSHQPQLLLTQLPSTPAPINPTPINPSSY 265 Query: 448 QQRADP 465 Q + P Sbjct: 266 QPNSHP 271 >SB_41786| Best HMM Match : AT_hook (HMM E-Value=0.24) Length = 324 Score = 31.5 bits (68), Expect = 0.45 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%) Frame = +1 Query: 337 PNFITAV--SPTP-ANLQNHLPPQDLPATPHPVPVQPILV 447 P +TA +PTP A+L+ PP+D+P P PVP + +V Sbjct: 107 PEEVTAKDQAPTPQASLEEVEPPKDIPPLPPPVPKEKPIV 146 >SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 476 Score = 31.5 bits (68), Expect = 0.45 Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 7/86 (8%) Frame = +1 Query: 274 PPAPISGHGNLLSSVAPPSQLP----NFITAVSPTPANLQNHLPPQDLPATPHPVPVQPI 441 PP P + + PPSQ P + + P P PP + P P+ Sbjct: 307 PPPPAASEPAAFAPAPPPSQAPPPPKTIPSTLPPPPVPSATSAPPPWATSNSGPKPLMST 366 Query: 442 LVQQ---RADPAAETEKFSPAIPWSK 510 VQ+ P A P PWSK Sbjct: 367 PVQRPPGMRPPGAGNGPGGPPPPWSK 392 Score = 28.3 bits (60), Expect = 4.2 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 319 APPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPV 432 APP + A +P P Q PP+ +P+T P PV Sbjct: 306 APPPPAASEPAAFAPAPPPSQAPPPPKTIPSTLPPPPV 343 >SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) Length = 638 Score = 31.5 bits (68), Expect = 0.45 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = +1 Query: 244 SSDKKTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHP 423 S+ ++ +PPAP+ N +AP L + P P++ LPP + P P Sbjct: 413 STVSNSKEKKPPAPLPKAHN--EKIAPLPSLRASAATLPPLPSDEPPPLPPDEEKPPPPP 470 Query: 424 VPVQPIL 444 P P L Sbjct: 471 APALPPL 477 >SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19) Length = 619 Score = 30.7 bits (66), Expect = 0.78 Identities = 24/75 (32%), Positives = 33/75 (44%) Frame = +1 Query: 268 PEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQPILV 447 P PP P+ H APP QLP P P + + PQ+ P T P+Q +L+ Sbjct: 65 PVPPTPLVQHPE---PEAPP-QLP------PPPPFIVDDTESPQEQPPTTPVSPLQQLLL 114 Query: 448 QQRADPAAETEKFSP 492 + R D E+ P Sbjct: 115 KGRIDKQEPEEEQKP 129 >SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1850 Score = 30.3 bits (65), Expect = 1.0 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Frame = +1 Query: 268 PEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHP--VPVQPI 441 P P + + + A P+Q P TA T Q + P PAT +P PV P Sbjct: 1295 PAPAPAAQAYPSAAPATAYPTQAPANPTAAPATAYPAQAPVNPTAAPATAYPAQAPVNPT 1354 Query: 442 LVQQRADPA 468 A PA Sbjct: 1355 AAPATAYPA 1363 >SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062) Length = 830 Score = 29.9 bits (64), Expect = 1.4 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Frame = +1 Query: 256 KTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQ 435 +T IP + I+ H + + AP PN ++P+P N+ PP P+ PH P+ Sbjct: 280 RTEIPPLSSLIATHNHSPPNTAPSP--PN----IAPSPPNIAPS-PPNTAPSPPHSDPIA 332 Query: 436 PILVQQRAD--PAAETEKFSPAIP 501 L A P + PA P Sbjct: 333 AALSGNLASTAPVISGQSSFPAPP 356 >SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) Length = 293 Score = 29.9 bits (64), Expect = 1.4 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Frame = +1 Query: 268 PEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQ-NHLPPQDLPATPHP---VPVQ 435 P P +PI + PP +P+ +V P P PPQ PA P+P P Q Sbjct: 119 PPPYSPIPPQVPYPGAAGPP--MPHPTASVYPPPGGYPPTSYPPQPYPAQPYPQQGYPPQ 176 Query: 436 PILVQQRADPAAETEKFSPAIPW 504 P Q P + + P P+ Sbjct: 177 P-PPQAYPQPGYPPQGYPPTGPY 198 >SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1680 Score = 29.5 bits (63), Expect = 1.8 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 5/93 (5%) Frame = +1 Query: 214 EVKYKV*FNMSSDKKTRIPEP-PAPISGHGNLLSSVAPPSQLPNFITAVSPTPAN--LQN 384 EV Y + + + P P PAP + P+Q N +PT A + + Sbjct: 704 EVPYPTLSTAAQPTQAQNPAPTPAPTQAQNP--APTPAPTQAQNPAPTPAPTQAQPPVPS 761 Query: 385 HLPPQDLPATPHPVPVQPIL--VQQRADPAAET 477 P Q P P P P Q +L + + PA T Sbjct: 762 PAPTQAQPPAPSPAPTQALLQTMANQTQPATAT 794 Score = 28.7 bits (61), Expect = 3.2 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Frame = +1 Query: 265 IPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPV-QPI 441 +PE P P LS+ A P+Q N A +P P QN P +P P P Sbjct: 702 VPEVPYPT------LSTAAQPTQAQN--PAPTPAPTQAQNPAPTPAPTQAQNPAPTPAPT 753 Query: 442 LVQQRADPAAETEKFSPA 495 Q A T+ PA Sbjct: 754 QAQPPVPSPAPTQAQPPA 771 Score = 27.9 bits (59), Expect = 5.5 Identities = 19/63 (30%), Positives = 22/63 (34%) Frame = +1 Query: 313 SVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQPILVQQRADPAAETEKFSP 492 S+ P P TA PT A P P P P P Q A A T+ P Sbjct: 700 SIVPEVPYPTLSTAAQPTQAQNPAPTPAPTQAQNPAPTPA-PTQAQNPAPTPAPTQA-QP 757 Query: 493 AIP 501 +P Sbjct: 758 PVP 760 >SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6) Length = 774 Score = 29.1 bits (62), Expect = 2.4 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +1 Query: 328 SQLPNFITAVSPTPANLQN---HLPPQDLPATPHPVPVQPIL 444 +Q P I+ V+PTP N+ N P D AT P PI+ Sbjct: 71 TQTPTSISNVTPTPTNINNISSTTTPLDSSATTTTTPTLPIV 112 >SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 158 Score = 29.1 bits (62), Expect = 2.4 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 244 SSDKKTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHP 423 ++ + T P P P + S P S P T +PTP P Q P P Sbjct: 18 ATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAP---TQTTPTPTTPSPTAPTQTTPTPATP 74 Query: 424 VPVQP 438 P P Sbjct: 75 TPTTP 79 Score = 27.5 bits (58), Expect = 7.3 Identities = 16/60 (26%), Positives = 22/60 (36%) Frame = +1 Query: 259 TRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQP 438 T P+ P P + + P+ TA +PT H P + P TP P P Sbjct: 78 TPTPKTPTPTTSTLTKPTPATTPTPTKPTPTAHTPTTPTPTAHTPTKPTPKTPTPTTPTP 137 >SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 737 Score = 29.1 bits (62), Expect = 2.4 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +1 Query: 274 PPAPISGHGN---LLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPAT 414 PP P+ LLS PP LP F +A++ L ++LPPQ LP++ Sbjct: 501 PPQPLPSSSTITFLLSHYLPPQPLP-FSSAITFL---LNHYLPPQPLPSS 546 >SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) Length = 942 Score = 29.1 bits (62), Expect = 2.4 Identities = 18/62 (29%), Positives = 26/62 (41%) Frame = +1 Query: 310 SSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQPILVQQRADPAAETEKFS 489 SS APP LP T+ S P + ++ PQ + A P +P + + P Sbjct: 260 SSAAPPQSLPGLQTSPSLQPPSQRSTPSPQSMSALHSGKPKRPGMPPSPSVPHQSQPAVP 319 Query: 490 PA 495 PA Sbjct: 320 PA 321 >SB_31197| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 469 Score = 29.1 bits (62), Expect = 2.4 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Frame = +1 Query: 259 TRIPEPPAPISGHGNLLSSVAPPSQLPNF-ITAVSPTPANLQNHLPPQDLPATPHPVPVQ 435 T+I PA G + SQLP +T V P QN LP L T HP PV Sbjct: 58 TQITITPAQTKLSGLQQTHTRVESQLPTCTVTTVPVIPPISQNPLPSPTL-VTVHPAPVP 116 Query: 436 PILVQQRADPAAETEK 483 + + P + ++ Sbjct: 117 IPITNANSSPDSSDDE 132 >SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) Length = 237 Score = 28.7 bits (61), Expect = 3.2 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Frame = +1 Query: 259 TRIPEPPAPISGHGNLLSSVAPPSQLP-NFITAVSP-TPANLQNHLPPQDLPATPHPVP 429 T P AP + + + P S P ++ A +P TPA+ +PP +TP P P Sbjct: 60 TPAPAQQAPHTTAASQPAPYTPASGQPASYTPAYTPYTPASTVGRMPPTTSQSTPSPAP 118 >SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) Length = 808 Score = 28.3 bits (60), Expect = 4.2 Identities = 17/60 (28%), Positives = 24/60 (40%) Frame = +1 Query: 319 APPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQPILVQQRADPAAETEKFSPAI 498 AP P+ T +PT N LPP P T H +P + A E+ P++ Sbjct: 300 APAKVQPSTPTP-TPTCMTPLNRLPPTPSPTTTHAIPQAYVSTPVNQSTVANREQALPSV 358 >SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1071 Score = 28.3 bits (60), Expect = 4.2 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +1 Query: 364 TPANLQNHLPPQDLPATPHPVPVQPILVQQRADPAAETEKFSPA 495 TP + + P DL TP+P+ V+P R +P TE+++P+ Sbjct: 687 TPCT-ERYTPCNDLSVTPYPLSVKP-YAMNRYNPC--TERYTPS 726 >SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) Length = 924 Score = 28.3 bits (60), Expect = 4.2 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Frame = +1 Query: 349 TAVSPTPANLQNHLPPQDLPATP-----HPVPVQPILVQQRADPAAETEK 483 T+ SP P + H PP P P P+ P VQ+ + P + K Sbjct: 280 TSPSPQPTEAKPHTPPPPTSTPPTTAPRQPSPMAPAPVQKESPPLTDDRK 329 >SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 469 Score = 28.3 bits (60), Expect = 4.2 Identities = 18/65 (27%), Positives = 26/65 (40%) Frame = +1 Query: 244 SSDKKTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHP 423 S+ + T +P P S L++ S P +T S N + H PP TP P Sbjct: 46 STSRPTNALQPLKPPSNTPQQLTTPPHQSNTPRPLTPPSRQSNNPRPHTPPSCQSNTPRP 105 Query: 424 VPVQP 438 + P Sbjct: 106 LTPPP 110 >SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8) Length = 232 Score = 28.3 bits (60), Expect = 4.2 Identities = 12/43 (27%), Positives = 27/43 (62%) Frame = +3 Query: 366 SSESTESLASTRFACYTTPSTRSTHFSTAESRSSSRNRKI*PS 494 ++ + +L S + ++TPS ++TH S+ ++R +S + + PS Sbjct: 2 NTTAPSTLGSPGTSLFSTPSIQATHSSSIKTRDASLSSSLMPS 44 >SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4529 Score = 28.3 bits (60), Expect = 4.2 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 8/50 (16%) Frame = +1 Query: 355 VSPTPANLQNHLPPQDLPAT--------PHPVPVQPILVQQRADPAAETE 480 V P N Q +P Q +P P P PVQP+ QQ+ D + E Sbjct: 2099 VMQQPINQQVQIPQQGMPVNIQPGPPPAPPPPPVQPVGAQQQPDDQQQLE 2148 >SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 290 Score = 28.3 bits (60), Expect = 4.2 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = +1 Query: 268 PEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQP 438 P PP P + + ++ PP P + + P P N PP + P P P P P Sbjct: 131 PYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPN----PPPPNAPYPPPPYPPPP 183 Score = 27.5 bits (58), Expect = 7.3 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Frame = +1 Query: 268 PEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQN--HLPPQDLPATPHPVPVQP 438 P PP P + ++ PP P + P P N N + PP + P P+P P P Sbjct: 186 PYPPPPNPPYPPPPNAPNPPPPNPPY-----PPPPNAPNPPYPPPPNAPNPPYPPPPNP 239 >SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) Length = 330 Score = 28.3 bits (60), Expect = 4.2 Identities = 18/55 (32%), Positives = 21/55 (38%) Frame = +1 Query: 244 SSDKKTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLP 408 +S T P PP P + G SS P P A P P + LPP P Sbjct: 274 ASQNATPPPPPPPPSNTPGMFASSGFQPPPPPPTDFAPPPPPPEPTSELPPPPPP 328 >SB_57111| Best HMM Match : Drf_FH1 (HMM E-Value=3.3) Length = 451 Score = 27.9 bits (59), Expect = 5.5 Identities = 20/52 (38%), Positives = 25/52 (48%) Frame = +1 Query: 265 IPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPH 420 IP P P+ GN SSV P + P+ V+P A N +P PA PH Sbjct: 72 IPNPGVPL---GNNFSSVMPSTMSPSLPFFVAPLAA---NQMP---YPALPH 114 >SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) Length = 382 Score = 27.9 bits (59), Expect = 5.5 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 7/89 (7%) Frame = +1 Query: 256 KTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQN-------HLPPQDLPAT 414 +T+ P+PPAP + + PP+ I PTP + H+PP L Sbjct: 173 ETKPPKPPAP----STIPTPPTPPAPPSPPIPTAPPTPPMPETPLPPGSPHIPPAPLHPH 228 Query: 415 PHPVPVQPILVQQRADPAAETEKFSPAIP 501 P P P +P PA P Sbjct: 229 IPPAPPNPSKAIATPNPPMPETPLPPATP 257 >SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57) Length = 1121 Score = 27.9 bits (59), Expect = 5.5 Identities = 19/80 (23%), Positives = 33/80 (41%) Frame = +1 Query: 244 SSDKKTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHP 423 +SDK + EP + ++ ++ S P+ + +PTPA+ + P L T +P Sbjct: 796 ASDKNPEVTEPSSYVNTEMASPAAAGSSSITPSNLRPTNPTPAHATDGGTPTPLRPT-NP 854 Query: 424 VPVQPILVQQRADPAAETEK 483 P P+ T K Sbjct: 855 TPAHAASKPSNPRPSNPTPK 874 >SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 212 Score = 27.9 bits (59), Expect = 5.5 Identities = 20/67 (29%), Positives = 26/67 (38%) Frame = +1 Query: 301 NLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQPILVQQRADPAAETE 480 NLL P +L N S P NL+ PP+ P V P L + E Sbjct: 142 NLLPKNLLPRKLQNPSLQRSQPPRNLRRKPPPRSPLKRPPRSKVLPTLYNKTKRLLYEPP 201 Query: 481 KFSPAIP 501 KF+ +P Sbjct: 202 KFAKVVP 208 >SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1554 Score = 27.5 bits (58), Expect = 7.3 Identities = 20/65 (30%), Positives = 24/65 (36%) Frame = +1 Query: 244 SSDKKTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHP 423 SS + P P P S G S PP P +T PT + +PP HP Sbjct: 673 SSSAQMLPPMPGPPSSMSGPTTSRHGPP---PTGLTMNPPTSMGMAPMMPPPGPGMGTHP 729 Query: 424 VPVQP 438 V P Sbjct: 730 QQVSP 734 >SB_51860| Best HMM Match : ShTK (HMM E-Value=1.5e-09) Length = 197 Score = 27.5 bits (58), Expect = 7.3 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +1 Query: 316 VAPPSQL--PNFITAVSPTPANLQNHLPPQDLPATPHPVP 429 + PP+++ P + PTPA L PP +P P PVP Sbjct: 111 LVPPTEISGPGPKETLPPTPATL----PPTTVPPAPAPVP 146 >SB_28618| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 172 Score = 27.5 bits (58), Expect = 7.3 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +1 Query: 364 TPANLQNHLPPQDLPATPHPVPVQPILVQQRADPAAET 477 TP L+N P +PA+ HP+P QP Q + ET Sbjct: 26 TPTALENSNPSPLIPASHHPIP-QP--TQSNTSQSEET 60 >SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) Length = 1097 Score = 27.5 bits (58), Expect = 7.3 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 6/86 (6%) Frame = +1 Query: 295 HGNLLSSVAPPSQLPNFITAVSPTP------ANLQNHLPPQDLPATPHPVPVQPILVQQR 456 +G + S PPS PN + VS P A+L + PP P+ PHP V + Sbjct: 918 NGAVACSRGPPSTSPNAV-GVSGVPMATLITASLSRYPPPPQ-PSRPHPWTVGAWDPKDE 975 Query: 457 ADPAAETEKFSPAIPWSKGEAMVSVR 534 D E+ A+ + A V R Sbjct: 976 KDLCPESHSNGVAVAPASDAACVKTR 1001 >SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 431 Score = 27.5 bits (58), Expect = 7.3 Identities = 24/70 (34%), Positives = 32/70 (45%) Frame = +1 Query: 310 SSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQPILVQQRADPAAETEKFS 489 SS PP P + P PA Q +P D+P +P PVP P Q+ +A + S Sbjct: 134 SSTPPP---PAKEAPLPPPPAQ-QEAVP--DIPTSPPPVPPLPTEPLQQTTTSAPS-LIS 186 Query: 490 PAIPWSKGEA 519 PA S +A Sbjct: 187 PAAAGSPSDA 196 >SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1574 Score = 27.5 bits (58), Expect = 7.3 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 291 RNRCWRFRNPRLFIRTHVELYFIFHFTSLLMRMAT 187 ++ W+ N R + ++L FHFT L+MR T Sbjct: 1178 KDEWWQSENGRENVYLQLDLESEFHFTHLIMRFRT 1212 >SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1) Length = 616 Score = 27.5 bits (58), Expect = 7.3 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +1 Query: 280 APISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQ-DLPATPH 420 +P + HGN + V ++LP+ T ++ + AN P D A PH Sbjct: 322 SPPTNHGNQPTQVMDSNRLPDLTTTIASSEANTPAPDPLHVDTVARPH 369 >SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016) Length = 1284 Score = 27.5 bits (58), Expect = 7.3 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Frame = +1 Query: 244 SSDKKTRIPEPPAPISGHGNL---LSSVAPPSQLPNFITAVSPTPANL--QNHLPPQDLP 408 SS + PP P+ G GNL L+ + P L + V P P +H P DLP Sbjct: 231 SSQSGSNDSPPPFPVEGEGNLTTFLAKIQAPRLLLRALDWVLPAPQRTPSSDHSLP-DLP 289 Query: 409 ATPH 420 PH Sbjct: 290 --PH 291 >SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 145 Score = 27.1 bits (57), Expect = 9.6 Identities = 19/58 (32%), Positives = 20/58 (34%), Gaps = 1/58 (1%) Frame = +1 Query: 322 PPSQLPNFITAVSPTPANLQNHLPPQDLP-ATPHPVPVQPILVQQRADPAAETEKFSP 492 PP P A P PA PP P A P P P P A PA + P Sbjct: 53 PPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQPAPQPPPAPP 110 >SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 791 Score = 27.1 bits (57), Expect = 9.6 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +3 Query: 360 AYSSESTESLASTRFACYTTPSTRSTHFSTAESRSSSRNRKI*PSHTL 503 +YSS S S +S+ + +++ S T S + SR+SSR+ SH++ Sbjct: 197 SYSSRSRSSSSSSSGSSHSSRSQSHTPSSGSGSRNSSRSASRSQSHSV 244 >SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) Length = 480 Score = 27.1 bits (57), Expect = 9.6 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +1 Query: 274 PPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQPILVQQ 453 PP P G G S+APP P + P P +N PP T P P + Sbjct: 215 PPPPPPGRGPSQRSLAPP---PTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPP----K 267 Query: 454 RADPAAETEKFSPAIPWSKG 513 A P + +P P ++G Sbjct: 268 NAPPPPKRGSSNPPPPPTRG 287 >SB_33909| Best HMM Match : FH2 (HMM E-Value=0) Length = 1063 Score = 27.1 bits (57), Expect = 9.6 Identities = 17/59 (28%), Positives = 21/59 (35%) Frame = +1 Query: 253 KKTRIPEPPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVP 429 KK P PP P+ +L PP P ++ P P PP P P P Sbjct: 674 KKVPPPPPPLPVIEGSSLSVPPPPPPPPPPLLSGTLPMPP--PPPPPPPGCAGLPPPPP 730 >SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 195 Score = 27.1 bits (57), Expect = 9.6 Identities = 19/66 (28%), Positives = 34/66 (51%) Frame = +3 Query: 273 TSSTYFWSWQPAI*CSTTVAASQLHYCCFAYSSESTESLASTRFACYTTPSTRSTHFSTA 452 TS+T + S + C+T+ + + C +Y+ ST S ST TT T +T ++T Sbjct: 129 TSTTSYTS-TTSYTCTTSYTCTTSYTCTTSYT--STTSYTSTTSYTSTTSYTSTTSYTTT 185 Query: 453 ESRSSS 470 S +++ Sbjct: 186 TSYTTT 191 >SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) Length = 392 Score = 27.1 bits (57), Expect = 9.6 Identities = 23/80 (28%), Positives = 31/80 (38%) Frame = +1 Query: 274 PPAPISGHGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPATPHPVPVQPILVQQ 453 PP P G G S+APP P + P P +N PP T P P + Sbjct: 127 PPPPPPGRGPSQRSLAPP---PTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPP----K 179 Query: 454 RADPAAETEKFSPAIPWSKG 513 A P + +P P ++G Sbjct: 180 NAPPPPKRGSSNPPPPPTRG 199 >SB_1061| Best HMM Match : Extensin_2 (HMM E-Value=2) Length = 352 Score = 27.1 bits (57), Expect = 9.6 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Frame = +1 Query: 322 PPSQLPNFITAVS----PTPANLQNHLPPQDLPATPHPVPVQPILVQQRADPAAETEKFS 489 PP Q P+++ V P P + H P P T VP Q ++ Q P + Sbjct: 264 PPPQQPHYVQQVGVANPPVPPS-SFHSPLLAYPPTSTNVPTQVLVGIQGYGPPGIQANST 322 Query: 490 PAIPWSKG 513 P +P +G Sbjct: 323 PQLPMYRG 330 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,521,198 Number of Sequences: 59808 Number of extensions: 349058 Number of successful extensions: 1180 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 936 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1140 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1203486867 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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