Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G06
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.85 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 295 HGNLLSSVAPPSQLPNFITAVSPTPANLQNHLPPQDLPAT 414
           H   LS    P Q P F    SP+ + +++     D PA+
Sbjct: 555 HRASLSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPAS 594


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +3

Query: 384 SLASTRFACYTTPSTRSTHFST 449
           S A   F C  TP     HF+T
Sbjct: 187 SEAEAEFVCIATPEAIELHFTT 208


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 359 ETAVMKLGSCDGGATLDSRL 300
           E A    GSC  GA LDS+L
Sbjct: 525 EAADFFSGSCAPGAPLDSKL 544


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 359 ETAVMKLGSCDGGATLDSRL 300
           E A    GSC  GA LDS+L
Sbjct: 525 EAADFFSGSCAPGAPLDSKL 544


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 359 ETAVMKLGSCDGGATLDSRL 300
           E A    GSC  GA LDS+L
Sbjct: 525 EAADFFSGSCAPGAPLDSKL 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,447
Number of Sequences: 438
Number of extensions: 3669
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)