Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G05
(480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 194 4e-51
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 44 9e-06
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 0.84
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 5.9
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 5.9
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 5.9
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 5.9
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 7.8
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 194 bits (474), Expect = 4e-51
Identities = 92/157 (58%), Positives = 118/157 (75%)
Frame = +1
Query: 10 EYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHI 189
+Y F+V DNV SQQM +R LRG + ++MGKNTM+R+A++ + P LE+LLP +
Sbjct: 21 KYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPVV 80
Query: 190 KGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALS 369
+GNVGFVFT DL +VR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL
Sbjct: 81 RGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALG 140
Query: 370 IPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLN 480
IPTKI++GTIEI +DVH++ KVG SEATLLNMLN
Sbjct: 141 IPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLN 177
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 44.4 bits (100), Expect = 9e-06
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Frame = +1
Query: 25 FIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPA--LEKLLPHIKGN 198
+I N+ + +++IR +G S + MGK +M KA+ E A + KL + G
Sbjct: 41 WIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGA 99
Query: 199 VGFVFTRGDLVDVRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTGLGPEKTSFF-- 357
VG +FT +V E+ VQ AR GA+AP + VIPA G P +
Sbjct: 100 VGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLT 158
Query: 358 -------QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 474
+ L +PT + G + ++ D + G ++ + + LL +
Sbjct: 159 HTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKL 204
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.9 bits (59), Expect = 0.84
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 407 IISIVPFEILVGMERAWKKEVFSGPRPVL*AGMTTDNGAMAP 282
IIS P + L+G+ AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2
Query: 341 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 213
+G PV + + G++ P AGAW L N L T ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 97 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 231
I L+G N ++ DH++ +P ++ P+I V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 5.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 91 HSIVLMGKNTMMRKAIKDHLE 153
HS++ KNT KA+ HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 117 HHDEESHQGPS*NKSSSRKTASSHQG 194
HH+ + S S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 24.6 bits (51), Expect = 7.8
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 354 ERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 187
++ +L K + D+R + R LD LQ +I +IST + N +L+
Sbjct: 271 KQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQTVNENITRISTSIELKNTALE 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,995
Number of Sequences: 5004
Number of extensions: 43107
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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