Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G05
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        227   5e-60
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  27   6.1  
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)                      27   8.0  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  227 bits (554), Expect = 5e-60
 Identities = 106/147 (72%), Positives = 124/147 (84%)
 Frame = +1

Query: 10  EYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHI 189
           EYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HLE NP LEKLLPHI
Sbjct: 5   EYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKLLPHI 64

Query: 190 KGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALS 369
           KGN+GFVFT+ DL DVR  ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+
Sbjct: 65  KGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALA 124

Query: 370 IPTKISKGTIEIINDVHILKPGDKVGA 450
           IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 125 IPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +1

Query: 253  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 426
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 427  KPGDK 441
             PG K
Sbjct: 2129 TPGKK 2133


>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 69  DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASS 185
           D Y     QH  H Q  HD ++H+  + +++++R  A S
Sbjct: 144 DQYTTQPDQHMTHNQIDHDTQTHRPTTRSQTNTRHAARS 182


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 446  PTLSPGFRIWTSLIISIVPFEILVGMERAWKKEVFSGPR 330
            P   P FR   +L+ ++  ++    M RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878


>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
          Length = 152

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 67  QIRISLRGHSIVLMGKNTMMRKAIKDHLETNP 162
           Q+R  L   S +L+G NT+++ A+ D L   P
Sbjct: 23  QVRPGLTALSTILLGANTVIQAALPDILAKTP 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,113,839
Number of Sequences: 59808
Number of extensions: 345531
Number of successful extensions: 962
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)