Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G05
(480 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 184 2e-47
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 184 2e-47
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 182 8e-47
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 43 1e-04
At3g50610.1 68416.m05534 hypothetical protein 31 0.30
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 28 2.8
At4g22580.1 68417.m03258 exostosin family protein contains Pfam ... 28 3.7
At3g21340.1 68416.m02695 leucine-rich repeat protein kinase, put... 28 3.7
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 27 6.5
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 27 6.5
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide... 27 8.7
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide... 27 8.7
At5g26600.2 68418.m03183 expressed protein weak similarity to SP... 27 8.7
At5g26600.1 68418.m03182 expressed protein weak similarity to SP... 27 8.7
At4g14620.1 68417.m02250 expressed protein contains Pfam profile... 27 8.7
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 27 8.7
At3g08670.1 68416.m01007 expressed protein 27 8.7
At2g28960.1 68415.m03523 leucine-rich repeat protein kinase, put... 27 8.7
At1g17590.3 68414.m02169 CCAAT-binding transcription factor (CBF... 27 8.7
At1g17590.2 68414.m02168 CCAAT-binding transcription factor (CBF... 27 8.7
At1g17590.1 68414.m02167 CCAAT-binding transcription factor (CBF... 27 8.7
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 184 bits (449), Expect = 2e-47
Identities = 89/158 (56%), Positives = 118/158 (74%), Gaps = 2/158 (1%)
Frame = +1
Query: 10 EYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLP 183
EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H E N A+ LLP
Sbjct: 23 EYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLP 82
Query: 184 HIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQA 363
++GNVG +FT+GDL +V +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ
Sbjct: 83 LLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQV 142
Query: 364 LSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 477
L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 143 LNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 184 bits (449), Expect = 2e-47
Identities = 89/158 (56%), Positives = 118/158 (74%), Gaps = 2/158 (1%)
Frame = +1
Query: 10 EYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLP 183
EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H E N A+ LLP
Sbjct: 23 EYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLP 82
Query: 184 HIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQA 363
++GNVG +FT+GDL +V +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ
Sbjct: 83 LLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQV 142
Query: 364 LSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 477
L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 143 LNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 182 bits (444), Expect = 8e-47
Identities = 88/158 (55%), Positives = 117/158 (74%), Gaps = 2/158 (1%)
Frame = +1
Query: 10 EYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLET--NPALEKLLP 183
EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H + N A LLP
Sbjct: 24 EYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLP 83
Query: 184 HIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQA 363
++GNVG +FT+GDL +V +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ
Sbjct: 84 LLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQV 143
Query: 364 LSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 477
L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 144 LNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKL 181
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 42.7 bits (96), Expect = 1e-04
Identities = 31/159 (19%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Frame = +1
Query: 10 EYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETN--PALEKLLP 183
+Y ++ +N+ + + ++ R R + +G N +M+ A+ E + K+
Sbjct: 36 KYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSK 95
Query: 184 HIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPEKTSFFQ 360
++G+ G + T +V + +R G+IA +V + E +
Sbjct: 96 LLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLR 155
Query: 361 ALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 477
L +P +++KGT+E++ D + + G ++ A +L +L
Sbjct: 156 KLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLL 194
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 31.5 bits (68), Expect = 0.30
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 142 DHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD-KLLENKVQAPARPGAIAPLSVVIPA 318
D + T+P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 319 HNTGLGPEK 345
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 61 MQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFV 210
+++I++ +G+ +L+G NT + K K L K+ K +GFV
Sbjct: 124 IERIKVLFKGYRDLLLGFNTFLPKGYKITLLPEEEKPKIRVDFKDAIGFV 173
>At4g22580.1 68417.m03258 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 435
Score = 27.9 bits (59), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 324 HWPWS*EDFFLPGSFHPH 377
+WPW + P SFHPH
Sbjct: 213 YWPWQEQAVPYPTSFHPH 230
>At3g21340.1 68416.m02695 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 121 MMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLL 252
++ + I + L N + EK PHI VG + T+GD+ ++ D L
Sbjct: 764 VLLEIITNQLVINQSREK--PHIAEWVGLMLTKGDIQNIMDPKL 805
>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1132
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 179 FLTSRE-MLALSSPVEILLMCVINCWRTKSKP 271
FLTS+E L++SS +++ V+N WR P
Sbjct: 897 FLTSQEEFLSMSSDAAKVVVAVLNLWRCWKNP 928
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 181 PHIKGNVGFVFTRGDLVDVRDKLL 252
PHI VGF+ T+GD+ + D L
Sbjct: 792 PHINDWVGFMLTKGDIKSIVDPKL 815
>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 810
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 253 ENKVQAPARPGAIAPLSVVIPAHNTGLGPE 342
EN + P +P IAP + V + T + PE
Sbjct: 620 ENAAETPVKPSVIAPETPVRTSEQTVIAPE 649
>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 809
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 253 ENKVQAPARPGAIAPLSVVIPAHNTGLGPE 342
EN + P +P IAP + V + T + PE
Sbjct: 620 ENAAETPVKPSVIAPETPVRTSEQTVIAPE 649
>At5g26600.2 68418.m03183 expressed protein weak similarity to
SP|P18549 Isopenicillin N epimerase (EC 5.-.- )
{Streptomyces clavuligerus}
Length = 475
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 336 TKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKANIS 193
TK S + +NG+ S DFV + I+H N IS+ E ++ S
Sbjct: 18 TKRYTSSASSASSTTNGTVESSVSDFVKRPKISHPNYISSSEIESEFS 65
>At5g26600.1 68418.m03182 expressed protein weak similarity to
SP|P18549 Isopenicillin N epimerase (EC 5.-.- )
{Streptomyces clavuligerus}
Length = 475
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 336 TKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKANIS 193
TK S + +NG+ S DFV + I+H N IS+ E ++ S
Sbjct: 18 TKRYTSSASSASSTTNGTVESSVSDFVKRPKISHPNYISSSEIESEFS 65
>At4g14620.1 68417.m02250 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 341
Score = 26.6 bits (56), Expect = 8.7
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -1
Query: 438 ITRLQDMDIIDNFNSTL*NLSGDG--KSLE-ERSLLRTKASVMSGNDDRQWSNGSRTSR 271
+ RL D NS +SGDG E E SL + + M N+D+Q NG T R
Sbjct: 28 LKRLLDRPFTRISNSEKLLISGDGVVAGTEFEPSLAKMVQNYMEENNDKQTKNGRNTHR 86
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 364 EPGRKKSSQDQGQCYE 317
EPG+ KSS G+CY+
Sbjct: 293 EPGQMKSSSSSGECYK 308
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 305 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVKTKPTFPLM 186
T ++ GRA + SLSR S+ PRV+ P P++
Sbjct: 285 TSGPTISGGRAASNGRTGPSLSRPSSPGPRVRNTPQQPIV 324
>At2g28960.1 68415.m03523 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 181 PHIKGNVGFVFTRGDLVDVRDKLL 252
PHI VG++ T+GD+ +V D L
Sbjct: 782 PHIAAWVGYMLTKGDIENVVDPRL 805
>At1g17590.3 68414.m02169 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 328
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 256 SPTVY-HAHQQDLHG*RQSQHF 194
+PT+Y H D+HG R + HF
Sbjct: 303 NPTMYVHGQSNDMHGGRNTHHF 324
>At1g17590.2 68414.m02168 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 328
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 256 SPTVY-HAHQQDLHG*RQSQHF 194
+PT+Y H D+HG R + HF
Sbjct: 303 NPTMYVHGQSNDMHGGRNTHHF 324
>At1g17590.1 68414.m02167 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 328
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 256 SPTVY-HAHQQDLHG*RQSQHF 194
+PT+Y H D+HG R + HF
Sbjct: 303 NPTMYVHGQSNDMHGGRNTHHF 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,313,251
Number of Sequences: 28952
Number of extensions: 241816
Number of successful extensions: 749
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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