Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G04
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    27   2.1  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   2.1  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    26   3.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   6.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.4  

>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 311 EETDDATLKRSLIKSR*KFRATVQRDTIASRAQLVSHMSL 192
           +E    T     +KS+ K R T+   +I S   LVSH S+
Sbjct: 29  DENRTTTSNLDSVKSKKKRRKTISDASIVSNGSLVSHPSI 68


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSSQ 491
           P+ +NKP+ +    T+KPP      ED V  + S+P   S+
Sbjct: 448 PAPENKPEKSS---TSKPPVPENKAEDSVVLKSSVPEDKSE 485


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 381 NKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPS 485
           N P +T     + P +  +GG    Y  D++P PS
Sbjct: 56  NAPSSTFESVRSPPESRREGGMGSGYQRDAIPIPS 90


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 387 VYFVEKAMARSTLWACNLQNHIATA 313
           + F+E+ + R T W+C L +  A++
Sbjct: 549 ISFLERELRRRTFWSCFLMDRYASS 573


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +3

Query: 345 PRVCCGPLPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
           P     P P  + +P T+  PR + PP        P     + P PSS
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPP--PSPASAPPIPSKAPPIPSS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,346
Number of Sequences: 5004
Number of extensions: 35792
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)