Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G04
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0797 - 11296426-11297258,11297745-11297901                       32   0.29 
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56...    29   1.6  
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580...    28   3.6  
09_03_0025 - 11665969-11666417,11666490-11666594,11666667-116668...    27   6.3  
09_02_0543 + 10427321-10428315,10428440-10429154                       27   6.3  
01_06_1737 - 39559321-39559461,39559761-39559817,39559919-395601...    27   6.3  
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004     27   8.4  

>03_02_0797 - 11296426-11297258,11297745-11297901
          Length = 329

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 390 QTTQSPRTTKPP-NYTQGGEDPVYDEDSLPAPSSQC 494
           Q  Q   T  PP ++  GG D +Y+   LPAP + C
Sbjct: 160 QQQQEGGTDTPPLSWQHGGSDGLYESPELPAPDASC 195


>08_01_0080 +
           566509-566746,566904-567151,567347-567532,567639-567734,
           567836-567907,567990-568106,570531-571676
          Length = 700

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
 Frame = +3

Query: 306 FLRQSQCGFEGYTPRVCCGPL------PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDED 467
           + +Q    +EG  P    GP       PSQ       Q P++  P NY  G  DP Y   
Sbjct: 409 YYKQGSQPYEGQPPNYPPGPGNYNSYGPSQGPNYGQPQYPQSAPPQNYGPGYGDPRY--- 465

Query: 468 SLPAPSSQ 491
           + PAP+ Q
Sbjct: 466 NAPAPNQQ 473


>03_06_0427 -
           33857008-33857137,33857224-33857258,33857966-33858046,
           33858213-33858338,33858410-33858568,33858797-33858934,
           33859084-33859155,33859359-33860273
          Length = 551

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
 Frame = +3

Query: 345 PRVCCGPLPSQQNKPQT----TQSPRTTKPPN--YTQGGEDPVYDEDSLPAPSSQCG 497
           PR    PLP    +P       Q+P+    P+     GG+D  YDED  P    + G
Sbjct: 221 PRDARPPLPGNGGQPPPGGDHPQAPKLKHLPDDRAASGGDDAEYDEDQGPGDGDETG 277


>09_03_0025 -
           11665969-11666417,11666490-11666594,11666667-11666856,
           11666933-11667120,11667240-11667571,11667654-11667940,
           11668027-11668911
          Length = 811

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 366 LPSQQNKPQTTQSPRTTKPP--NYTQGGEDPVYDEDSLPAPSSQ 491
           LP   N+  TT++  T +PP  N +  G DP   E      +SQ
Sbjct: 445 LPPTGNQSATTETATTQEPPTGNQSDAGPDPEIPEVEAQTTTSQ 488


>09_02_0543 + 10427321-10428315,10428440-10429154
          Length = 569

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +3

Query: 363 PLPSQQNKP---QTTQSPRTTKPPNYTQGGEDPVYDEDSLPAP 482
           P P QQ+ P   + T +P+ T PP   + G  P    D  P P
Sbjct: 5   PDPIQQDSPAPPRPTPAPQATPPPAIPESGPPPPPAPDMPPPP 47


>01_06_1737 -
           39559321-39559461,39559761-39559817,39559919-39560117,
           39560217-39560344,39560443-39560548,39560721-39560800,
           39561189-39561286,39561368-39561481,39561567-39561707,
           39561801-39561885,39562761-39563099
          Length = 495

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 363 PLPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYD 461
           P P+ Q  P    SP  T+PP    G   P  D
Sbjct: 66  PYPAYQQPPPPMPSPAATQPPARAGGASKPRLD 98


>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
          Length = 578

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 366 LPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPA 479
           LPS+  +P     P    P    QGGEDP+    S+PA
Sbjct: 131 LPSRIREPDLELPPHVEGPSVGRQGGEDPL--NKSVPA 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,451,759
Number of Sequences: 37544
Number of extensions: 242509
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)