Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G04
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1) 33 0.099
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5) 30 1.2
SB_57436| Best HMM Match : SCP (HMM E-Value=3.9e-13) 29 2.1
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 29 2.8
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 3.7
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 28 4.9
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_58442| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.81) 27 6.5
SB_58440| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.81) 27 6.5
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 27 6.5
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 27 8.6
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 27 8.6
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1)
Length = 705
Score = 33.5 bits (73), Expect = 0.099
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 357 CGPLPSQQNKPQTTQSPRTTK---PPNYTQGGEDPVYDEDSLPAP 482
C P PS T+ SPRT PP+ +Q G D DED + AP
Sbjct: 128 CSPGPSGTISASTSGSPRTLNQDSPPSPSQAGSDGGDDEDVVEAP 172
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 30.3 bits (65), Expect = 0.92
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P P+TT +P TTK P T E + E S PAP S
Sbjct: 1901 PGTTMAPETTFTPETTKAPETTLPPETTMASE-STPAPES 1939
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P P+TT++P TT PP T E E +L AP +
Sbjct: 1907 PETTFTPETTKAPETTLPPETTMASESTPAPESTL-APET 1945
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 387 PQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSSQ 491
P+TT +P TT PP T E V E + ++Q
Sbjct: 3127 PETTDAPETTVPPETTDAPETTVASETTAEPDTTQ 3161
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 342 TPRVCCGPLPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLP 476
TP + P + P+TT SP TT+ P T E + E ++P
Sbjct: 4436 TPEITVAPKTTMA--PETTVSPETTEAPGTTVAPETTMAPETTIP 4478
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P P+TT +P TTK P T E V E ++ AP +
Sbjct: 3157 PDTTQAPETTVTPETTKAPETTVASETTVTPETTV-APET 3195
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLP 476
P P+TT +P TTK P T E E +LP
Sbjct: 1741 PGTTMAPETTFAPETTKAPETTLALETTTAPETTLP 1776
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P P+TT++P+TT P T G + E +L AP +
Sbjct: 1091 PDTTVAPETTEAPQTTAAPETTAGPATTLVPETTL-APET 1129
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 390 QTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
+TT +P TT PP T E + E +L AP +
Sbjct: 2214 ETTTAPETTLPPETTMASESTLAQESTL-APET 2245
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 366 LPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
LP + P+TT P TT P T E + D+ AP +
Sbjct: 3126 LPETTDAPETTVPPETTDAPETTVASETTA-EPDTTQAPET 3165
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 384 KPQTTQSPRTTKPPNYTQGGEDPVYDEDSL 473
+P TTQ+P TT P T+ E V E ++
Sbjct: 3156 EPDTTQAPETTVTPETTKAPETTVASETTV 3185
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P P+TT +P TT P T E V E ++ AP S
Sbjct: 5166 PGTTVAPETTMAPETTVAPETTMAPETTVPQETTI-APES 5204
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P + P+TT +P TT P T E V E +L AP +
Sbjct: 989 PVTTSVPETTAAPETTAAPETTAAPETTVEPETTL-APET 1027
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 390 QTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
+TT +P TT PP T E + E +L AP +
Sbjct: 2448 ETTTAPETTLPPETTMASESTLAPESTL-APET 2479
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P KP+TT++P TT P T + V E ++ AP S
Sbjct: 3921 PETTVKPETTEAPGTTVAPETTMVIDSTVAPETTI-APES 3959
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 366 LPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
+P P+TT +P T PP T E + E ++ AP +
Sbjct: 4725 VPETTVAPETTMAPEATVPPETTMAPESTLAPETTM-APEN 4764
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 366 LPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
+P P+TT +P T PP T E + E ++ AP +
Sbjct: 4785 VPETTVAPETTMAPEATVPPETTMAPESTLAPETTM-APET 4824
>SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)
Length = 128
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 363 PLPSQQNKPQTTQSPRTTK---PPNYTQGGEDPVYDEDSLPAP 482
P PS T+ SPRT PP+ +Q G D DED + AP
Sbjct: 75 PGPSGTISASTSGSPRTLNQDSPPSPSQAGSDGGDDEDVVEAP 117
>SB_57436| Best HMM Match : SCP (HMM E-Value=3.9e-13)
Length = 265
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 366 LPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPS 485
LP + P+TT P TT PP E + + P P+
Sbjct: 69 LPETTSLPETTNLPETTSPPETATPPETTTLPKVTTPKPT 108
>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
Length = 295
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 360 GPLPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAP 482
G +P+Q +P TTQ+P T P + +P + PAP
Sbjct: 212 GVVPTQAPRPPTTQTPPTKAPTDPPVPPTNPPVPPTNPPAP 252
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P P+TT SP TT P+ T G + + +++ AP +
Sbjct: 1938 PETTALPETTASPETTAKPD-TTGAPETTFVPETIAAPET 1976
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P P+TT SP TT P+ T G + + +++ AP +
Sbjct: 3093 PETTALPETTASPETTAKPD-TTGAPETTFVPETIAAPET 3131
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 366 LPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
+P P+TT SP TT P+ T G + + +++ P +
Sbjct: 2954 VPGTTAAPKTTASPETTAKPD-TTGAAETTFVPETIATPET 2993
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 387 PQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P+TT +P TT PP T E V E + AP++
Sbjct: 693 PETTSAPATTMPPEQTAAPETTVAPE-TTDAPAT 725
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDE 464
P P+TT +P TT PP T E V E
Sbjct: 2211 PETTVAPETTVAPETTMPPETTMAPETTVAAE 2242
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLP 476
P P+TT +P TT P T E V D P
Sbjct: 1025 PESTKAPETTMAPETTMAPETTVAAETMVPDTTLAP 1060
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P P+TT +P TT P T + P+ E ++ S+
Sbjct: 2775 PESTLAPETTAAPETTVAPETTAAPDTPIVPETTVALEST 2814
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 387 PQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P++T P TT P+ T E V E ++P P +
Sbjct: 1942 PESTLVPETTVAPDTTVAPETTVVPETTMPPPKT 1975
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P P+TT +P +T PP T+ + V E ++ AP S
Sbjct: 2456 PETTVAPETTVAPESTVPPETTEAPDTTVAPETTV-APES 2494
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P P+TT++P+TT P T G + E +L AP +
Sbjct: 2606 PDTTVAPETTEAPQTTAAPETTAGPATTLVPETTL-APET 2644
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSS 488
P P+TT+ P TT P+ T E V E ++ AP +
Sbjct: 487 PESAAAPETTKEPETTAAPDTTAAPETTVAPETTI-APET 525
>SB_58442| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.81)
Length = 341
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 345 PRVCCGPLPSQQNKPQTTQSPRTTKPPNYTQGGEDPVY 458
P+ +P Q TTQ+ +P QGG DP Y
Sbjct: 177 PQAIITSMPQQVVSMATTQAQMIQQPQAQEQGGTDPQY 214
>SB_58440| Best HMM Match : Ribosomal_L9_C (HMM E-Value=0.81)
Length = 427
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 345 PRVCCGPLPSQQNKPQTTQSPRTTKPPNYTQGGEDPVY 458
P+ +P Q TTQ+ +P QGG DP Y
Sbjct: 137 PQAIITSMPQQVVSMATTQAQMIQQPQAQEQGGTDPQY 174
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDE 464
P P+TT +P TT PP T E V E
Sbjct: 398 PETTVAPETTVAPETTMPPETTMAPETTVAAE 429
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +3
Query: 312 RQSQCGFEGYTPRVCCGPLPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDED 467
+Q G +GY PS KP Q +T PP QG PVY D
Sbjct: 446 QQKYQGRKGYQRHPQDSQSPSSSQKPAEPQPVQTYVPPQ--QGLPQPVYQID 495
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 375 QQNKPQTTQSPRTTKPP 425
Q KP TT+ PRTTKPP
Sbjct: 147 QTTKPHTTK-PRTTKPP 162
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 375 QQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSSQ 491
+Q++P + Q T PP ED +D P+P S+
Sbjct: 913 KQDEPISHQGNHTVVPPQQAHSTEDSKPSQDVKPSPDSK 951
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,463,623
Number of Sequences: 59808
Number of extensions: 291620
Number of successful extensions: 1725
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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