Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G04
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.33 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 360 GPLPSQQNKPQTTQSPRTTKPPNYTQG 440
           GP PS    PQ   +P+   PPN +QG
Sbjct: 22  GPQPSPHQSPQ---APQRGSPPNPSQG 45


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 332 KTTLRLPEETDDATLKRSLIKSR*KFRATVQRDTI-ASRAQLVSH 201
           K  L+ P   D  +L     K   KFRA  Q+D+  A  A +V H
Sbjct: 622 KRVLQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEAEPAVIVQH 666



 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 399 QSPRTTKPPNYTQGGEDPVYDEDSLPAPSSQC 494
           Q  RT    NY   GE      ++ P+P+ QC
Sbjct: 720 QLKRTDIIHNYIMRGEASPRSPNASPSPAEQC 751


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 250 QLYSETQLLVAPSWCHTCLCKNMTP 176
           Q+Y  + L+V  SW    L +N TP
Sbjct: 226 QIYIPSGLIVIISWVSFWLNRNATP 250


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 250 QLYSETQLLVAPSWCHTCLCKNMTP 176
           Q+Y  + L+V  SW    L +N TP
Sbjct: 226 QIYIPSGLIVIISWVSFWLNRNATP 250


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 250 QLYSETQLLVAPSWCHTCLCKNMTP 176
           Q+Y  + L+V  SW    L +N TP
Sbjct: 165 QIYIPSGLIVIISWVSFWLNRNATP 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,061
Number of Sequences: 438
Number of extensions: 2545
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)