Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G04
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid t...    31   0.43 
At1g26150.1 68414.m03192 protein kinase family protein similar t...    29   1.3  
At4g01770.1 68417.m00231 hypothetical protein similar to T15B16.9      29   1.7  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    29   2.3  
At3g60320.1 68416.m06742 expressed protein contains Pfam profile...    28   3.0  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    28   4.0  
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    27   5.3  
At5g09390.1 68418.m01088 CD2-binding protein-related similar to ...    27   7.0  
At3g23980.1 68416.m03012 dentin sialophosphoprotein-related cont...    27   7.0  
At3g21580.2 68416.m02722 expressed protein                             27   7.0  
At3g21580.1 68416.m02721 expressed protein                             27   7.0  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    27   9.3  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    27   9.3  
At1g50770.1 68414.m05710 hypothetical protein                          27   9.3  

>At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to lipid
           transfer protein - Hordeum vulgare, EMBL:AF109195;
           contains Pfam protease inhibitor/seed storage/LTP family
           domain PF00234
          Length = 158

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 21/95 (22%), Positives = 38/95 (40%)
 Frame = +3

Query: 213 LGATSNCVSLYSCSELLTAFDQRPLQSSVVSFLRQSQCGFEGYTPRVCCGPLPSQQNKPQ 392
           +G T++  +   CS L    D +P+   +   L+++  G +    +    P+  + N P 
Sbjct: 44  IGGTADTPTASCCSSLKNILDTKPI--CLCEGLKKAPLGIKLNVTKSATLPVACKLNAPP 101

Query: 393 TTQSPRTTKPPNYTQGGEDPVYDEDSLPAPSSQCG 497
            +           T  G+ PV+     PAPS   G
Sbjct: 102 VSACDSLPPASPPTANGQAPVWGSGWAPAPSPSKG 136


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 369 PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAPS 485
           P+  N P+TT +P  + PP  T     P   E S P+PS
Sbjct: 45  PTNGNPPETTNTPAQSSPPPETPLSSPP--PEPSPPSPS 81


>At4g01770.1 68417.m00231 hypothetical protein similar to T15B16.9
          Length = 361

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 492 TDSMELVKNLRHTLDLPHPACN 427
           TD M  +K L H+ DLPHP  N
Sbjct: 212 TDDMPQIKPLNHSHDLPHPDRN 233


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 203 HMSL*EHDSILE*IQNTKLILFPFWITKHFLDHCLILNHSL 81
           H+ L +HD   E  +  +  +FP  I  H   HC I N+SL
Sbjct: 354 HLRLKKHDGFREAEKQCRACVFP--IVSHQFYHCKICNYSL 392


>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
           PF04782: protein of unknown function (DUF632), PF04783:
           protein of unknown function (DUF630)
          Length = 796

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +3

Query: 213 LGATSNCVSLYSCSELLTAFDQRP---LQSSVVSFLRQSQCGFEGYTPRVCCGPLPSQQN 383
           L  T + +S ++  E L+  DQ P   L +       QS   F    PR    P PS   
Sbjct: 45  LRITGSALSSFASGEPLSVSDQTPAVFLHTPPPPLSEQSPAKF--VPPRFSPSPAPSSVY 102

Query: 384 KPQTTQSPRTTKPPN 428
            P T+ S  ++K P+
Sbjct: 103 PPSTSPSVASSKQPS 117


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +3

Query: 363 PLPSQQNKPQTTQSPRTTK---PPNYTQG-GEDPVYD 461
           P P +  KP+  Q P  TK   PPN  QG   D  YD
Sbjct: 477 PKPEESPKPEQPQIPEPTKPVSPPNEAQGPTPDDPYD 513


>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 342 TPRVCCGPLPSQQNKPQTTQSPRTTKPPNY 431
           TP+    P PS    P T   P T KPP++
Sbjct: 127 TPKPPTKPPPSTPKPPTTKPPPSTPKPPHH 156


>At5g09390.1 68418.m01088 CD2-binding protein-related similar to CD2
           cytoplasmic domain binding protein [Homo sapiens]
           GI:3983427
          Length = 351

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/75 (25%), Positives = 29/75 (38%)
 Frame = +3

Query: 273 DQRPLQSSVVSFLRQSQCGFEGYTPRVCCGPLPSQQNKPQTTQSPRTTKPPNYTQGGEDP 452
           +Q   Q     + R +Q    G    V C      +N P+ +   + +   + TQ   D 
Sbjct: 237 EQEVFQREAEGYERLAQAKENGTANIVSCDMFGDDENAPEPSSDLQPSSSISGTQLNSDY 296

Query: 453 VYDEDSLPAPSSQCG 497
           V+DE S    SS  G
Sbjct: 297 VFDESSGYYYSSSLG 311


>At3g23980.1 68416.m03012 dentin sialophosphoprotein-related
           contains weak similarity to Dentin sialophosphoprotein
           precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
          Length = 736

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -1

Query: 365 WPAAHSGRVTFKTTLRLPEETDDATLKRSLIKSR*KFRATVQRDTIASRA 216
           +PAA+     F T   +P++ DD T     I+   + + ++QRD  ASRA
Sbjct: 337 YPAANGVMPGF-TDFSMPKQNDDFTALEQHIEDLTQEKFSLQRDLDASRA 385


>At3g21580.2 68416.m02722 expressed protein
          Length = 384

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 211 NWARLAIVSRCTVARNF*RLLIKDLFRVASSVS 309
           NW +L ++    +  +F R + K++FR A  +S
Sbjct: 301 NWQQLTVLETLDIFASFIRRIFKNIFRHAEQIS 333


>At3g21580.1 68416.m02721 expressed protein
          Length = 205

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 211 NWARLAIVSRCTVARNF*RLLIKDLFRVASSVS 309
           NW +L ++    +  +F R + K++FR A  +S
Sbjct: 122 NWQQLTVLETLDIFASFIRRIFKNIFRHAEQIS 154


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 339 YTPRVCCGPL-PSQQNKPQTTQSPRTTKPPNYTQGGEDPVYDEDSLPAP 482
           YTP V    L P    KP  T  P    PP Y      PVY + ++P P
Sbjct: 47  YTPPVYKPTLSPPVYTKP--TIPPPVYTPPVYKHTPSPPVYTKPTIPPP 93


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 363 PLPSQQNKPQTTQSPRTTKPPNYTQGGEDPVYD 461
           P P +Q +P  T++P+   PP  +    DP YD
Sbjct: 584 PQPPKQEQPPKTEAPKMGSPPLESPVPNDP-YD 615


>At1g50770.1 68414.m05710 hypothetical protein
          Length = 632

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 366 LPSQQNKPQTTQSPRTTKPPNYT--QGGEDPVYDEDSLPAP 482
           LP++ + P++++ P   KP N T   G E P     S P+P
Sbjct: 3   LPTENSSPRSSKKPHLLKPCNNTSIDGSETP--QNRSAPSP 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,987,443
Number of Sequences: 28952
Number of extensions: 195650
Number of successful extensions: 542
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)