Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G03
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    28   0.49 
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    27   0.65 
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   1.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   3.5  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   3.5  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    25   4.6  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   4.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   4.6  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    24   8.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    24   8.0  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    24   8.0  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     24   8.0  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
 Frame = +1

Query: 121  KRNADLSQQKGSSVINLPTFLKQSEKVPAEVLDQLISNK------RLYNIILQNYPSMLA 282
            KRN  LS++K S    +    + SE  P +  +   + K      RL   +L++     A
Sbjct: 784  KRNTSLSRRK-SMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFA 842

Query: 283  LRSNSEQKLPVEPVAETPKTR 345
            L  N++QK PVE   +  K R
Sbjct: 843  LHENTQQKSPVEKPKKLRKDR 863



 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 116 TASKFS-ASAIDATKAVRIYSGVSPLFIKVFN 24
           T+S  S A ++  +K  RIY G++PL    FN
Sbjct: 536 TSSNLSIAGSLTPSKTSRIYRGLAPLKNPEFN 567


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 0.65
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 133 LHFFSLLLPNFQPLQSMPLKPLEYILVFLHSSSKSSIPQHQD 8
           +H ++ LLP  Q ++++P KP+  IL     S    I  H D
Sbjct: 41  IHVYAELLPCTQKIEALPFKPIGVILSGGPYSVYDDIAPHVD 82


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +1

Query: 52  TPEYILTALVASIAEAENLEAVTKRNADLSQQKGSSVINLPTFLKQSEKVPAEVLDQL 225
           +PE +L  ++ S  E ENL  + +   DL          +P F   S+K   E L  L
Sbjct: 276 SPEDLLKPIIRSTEEMENLNELEQEVQDLDPIDEGFEEKVPRFRNPSKKAFYEKLHSL 333


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 67  LTALVASIAEAENLEAVTKRNADLSQQKGSSVINLPTFLKQSEKVP 204
           L  L+ S    E L  +    A L  +KGS V + P+F K   ++P
Sbjct: 289 LEKLIISKITGEPLLYINLFKATLVTRKGSRVSDYPSFFKAYLQIP 334


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = +1

Query: 34  LMKSGETPEYI--LTALVASI 90
           L KSG+TPEYI  + A++ S+
Sbjct: 447 LFKSGQTPEYIEGIQAMIVSL 467


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 239 RLFDIS*SKTSAGTFSLCFKNVGKLI 162
           R+FD+   +T    +  CF+NV  +I
Sbjct: 195 RMFDVGGQRTERRKWIYCFENVNSII 220


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 58  EYILTALVASIAEAENLEAVTKRNADLSQQKGSSVINLPTFLK---QSEKVPAEVLDQL 225
           EYI + +  + +   NL      +  L++Q+G S+  +P  L+   +S  V  + L+QL
Sbjct: 118 EYISSEVARAASNRGNLRLTASTSKALAEQRGRSLREVPKQLEAINESFDVVQQPLEQL 176


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 328 PPLVPLAISVQSYFSKPTLKGSFA 257
           PPLVPL I    +F  P +    A
Sbjct: 572 PPLVPLLIGTTRFFPVPLVSSQIA 595


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 109 PNFQPLQSMPLKPLEYILVFLHSSSKSSIPQHQDLV 2
           P+F PL    +K L +    L  SS++++  H+D++
Sbjct: 573 PDFFPLLIRVVKSLNFHATSLLRSSRNTLDLHKDVL 608


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 82   ASIAEAENLEAVTKRNADLSQQKGSSVINLPTFL 183
            + + + E  EA  KRN   ++  G+ +I+ P FL
Sbjct: 953  SKVRDFEFCEAFEKRNFLQNKLSGNPIISTPNFL 986


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 160 LNCLSAEINLHFFSLLLPNFQPLQSMPLKPLEYILVFLHSSSKSSIPQ 17
           L+  S + +LH      P FQ    +PL          HSS  +S+PQ
Sbjct: 219 LSMHSLQESLHSVEPESPIFQQAPQIPLSNASQQSYINHSSDGASLPQ 266


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -3

Query: 142 EINLHFFSLLLPNFQPLQSMPLKPLEYILV---FLHSSS-KSSIPQHQDLV 2
           +INLH      P  + +Q + L+PL  +L+   F++ S+ +    QHQ ++
Sbjct: 121 KINLHIIYYHPPQPRKMQFLSLEPLSLLLLKDSFINKSNPEYESMQHQQIL 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.125    0.325 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,509,050
Number of Sequences: 5004
Number of extensions: 28827
Number of successful extensions: 67
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)