Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G03
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570...    30   0.61 
05_03_0249 - 10946993-10947073,10947307-10947432,10948497-109485...    28   1.9  
08_02_1378 + 26536082-26537803                                         28   2.5  
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394...    27   3.3  
05_02_0076 - 6365230-6365240,6365634-6365805,6365990-6366031,636...    27   5.7  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    26   7.6  

>11_01_0692 -
           5700394-5700474,5700546-5702675,5705033-5706169,
           5709679-5709975
          Length = 1214

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +1

Query: 64  ILTALVASIAEAENLEAVTKRNADLSQ--QKGSSVINLPTFLKQ 189
           +L++L ASI +A++L+ V    +DLS+  Q   +++ LP F+ Q
Sbjct: 825 LLSSLPASIGKADSLKFVNLNGSDLSKVPQWNKNLLTLPRFVVQ 868


>05_03_0249 -
           10946993-10947073,10947307-10947432,10948497-10948552,
           10949066-10949338,10951434-10951716
          Length = 272

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = +1

Query: 100 ENLEAVTKRNADLSQQKGSSVINLPTFLKQSEKVPAEVLDQLISNKRLYNIILQNYPSML 279
           +N+EAVTK++  L + K  SV  +  + K+  ++  +V +    ++     +     + L
Sbjct: 119 KNMEAVTKQSRTLEEAKHGSVEEIQQYQKEISRLNEQVQEFKRLSETKTEELKTAEANTL 178

Query: 280 ALRSNSEQK 306
           AL+  SE K
Sbjct: 179 ALQKQSEGK 187


>08_02_1378 + 26536082-26537803
          Length = 573

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
 Frame = +1

Query: 28  KTLMKSGETPEYILTALVASIAEAENLEAVTKRN--ADLSQQKGSSVINLPTFLKQSEKV 201
           K  + +G  P  ++ ALVA  AEA  + ++T  +   D+S +  +S+      +    +V
Sbjct: 209 KWSLTTGRFPLPLIAALVAFAAEANGVTSITVEDIARDISARLHTSLRRYKELVDALVRV 268

Query: 202 PAEVLDQLISNKRLYNIILQNYPSMLALRSNSEQKLPVEPVAET 333
             E+L    ++    N++L N P +L L     Q  P E   E+
Sbjct: 269 ARELL-PWGADVNAKNLLL-NAPVLLRLMEMRSQSDPSEQFLES 310


>04_04_0835 +
           28538032-28539006,28539113-28539203,28539291-28539448,
           28539543-28539594,28539707-28539786,28539890-28539983,
           28540078-28540633,28541160-28541259,28541576-28541617,
           28542445-28542588
          Length = 763

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 170 KLITELPFC*DKSAFLFVTASKFSASAIDATKAVRIYSGV 51
           K IT   FC    + L VT++      +D T  ++ YSG+
Sbjct: 446 KRITGFQFCPSNPSKLMVTSADSKIRILDGTNVIQNYSGL 485


>05_02_0076 -
           6365230-6365240,6365634-6365805,6365990-6366031,
           6366274-6366373,6366468-6366529,6367069-6367150,
           6368041-6368072
          Length = 166

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +1

Query: 100 ENLEAVTKRNADLSQQKGSSVINLPTFLKQSEKVPAEVLDQLISNKRLY--NIILQNYPS 273
           E +E   K N+D S     + IN   + +++ K+  ++ +   SN+ L   NI   N+  
Sbjct: 14  ETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRE 73

Query: 274 MLALRSNSEQKL 309
           +  L    ++ L
Sbjct: 74  LKQLEGRLDKGL 85


>02_01_0369 +
           2649178-2655291,2655773-2656601,2656737-2657425,
           2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 127 NADLSQQKGSSVINLPTFLKQSEKVPAEVLDQL 225
           N D + Q  + VINL   L+++EK    V ++L
Sbjct: 398 NTDDTPQSSNEVINLQVLLEETEKSKLAVCEEL 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.308    0.125    0.325 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,189,602
Number of Sequences: 37544
Number of extensions: 156614
Number of successful extensions: 316
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)