Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_G03
(357 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.12
SB_18181| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_18361| Best HMM Match : PLAT (HMM E-Value=0.038) 28 1.9
SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07) 28 1.9
SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56) 27 3.4
SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56) 27 3.4
SB_9453| Best HMM Match : Mucin (HMM E-Value=0.56) 27 3.4
SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_33955| Best HMM Match : SDA1 (HMM E-Value=0.79) 27 4.5
SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66) 27 4.5
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0) 27 4.5
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_55977| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_24642| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.8
SB_10444| Best HMM Match : Drf_FH1 (HMM E-Value=9.2) 26 7.8
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 26 7.8
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0) 26 7.8
>SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1342
Score = 32.3 bits (70), Expect = 0.12
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 97 AENLEAVTKRNADLSQQKGSSVINLPTFLKQSEKVPAEVLDQLISNKR-LYNIILQN 264
AE +E + K + L + G ++ P ++QSE+ PA V +L N+R L ++ ++N
Sbjct: 472 AEYVEGIAKERSKLDWE-GRAMYAYPVEIEQSEETPAYVAQKLNENRRFLISVAIRN 527
>SB_18181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 166 NLPTFLKQSEKVPAEVLDQLISNKRLYNIILQNYPSMLALRS-NSEQKLPVEPVAETPKT 342
NL SE +P + L + R+Y+IILQN M L S + +L E A+T +
Sbjct: 274 NLQDTANGSEPLPNKKLTKPEDMVRIYDIILQNLSDMSELHSVEDDLELTKEIAAQTLEY 333
Query: 343 RA 348
+A
Sbjct: 334 KA 335
>SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 890
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 316 PLAISVQSYFSKPTLKGSFAK*YYKGVYLILVDLRP-QLVPFHFASKMWV 170
PLA++V + + G ++ Y +GV++ VD++P P HF + W+
Sbjct: 458 PLALTVDIGTIEKIVLGQNSRGYGQGVFVDEVDVQPTNQPPVHFPCQCWL 507
>SB_18361| Best HMM Match : PLAT (HMM E-Value=0.038)
Length = 124
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 316 PLAISVQSYFSKPTLKGSFAK*YYKGVYLILVDLRP-QLVPFHFASKMWV 170
PLA++V + + G ++ Y +GV++ VD++P P HF + W+
Sbjct: 51 PLALTVDIGTIEKIVLGQNSRGYGQGVFVDEVDVQPTNQPPVHFPCQCWL 100
>SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07)
Length = 554
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/62 (24%), Positives = 36/62 (58%)
Frame = +1
Query: 88 IAEAENLEAVTKRNADLSQQKGSSVINLPTFLKQSEKVPAEVLDQLISNKRLYNIILQNY 267
+++ ENLE + ++ +++++ S N+ + Q++ VP EV + ++ + N +L+
Sbjct: 70 LSQMENLEKEQENSSHVTEERSSLQPNVDSPPDQTDDVPVEVAEDPLALPK--NEVLKEV 127
Query: 268 PS 273
PS
Sbjct: 128 PS 129
>SB_41789| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 683
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 112 AVTKRNADLSQQKGSSVINLPTFLKQSEKVPAEVLDQLISNKRLYNIILQNYPS 273
AVT +ADL+ K ++ N PT + +P +L +++ I L+N S
Sbjct: 355 AVTTPSADLAASKFPTITNTPTATTNTPTIPEGILQAKTPTQQI-TISLENQGS 407
>SB_41192| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 683
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 112 AVTKRNADLSQQKGSSVINLPTFLKQSEKVPAEVLDQLISNKRLYNIILQNYPS 273
AVT +ADL+ K ++ N PT + +P +L +++ I L+N S
Sbjct: 355 AVTTPSADLAASKFPTITNTPTATTNTPTIPEGILQAKTPTQQI-TISLENQGS 407
>SB_9453| Best HMM Match : Mucin (HMM E-Value=0.56)
Length = 642
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 112 AVTKRNADLSQQKGSSVINLPTFLKQSEKVPAEVLDQLISNKRLYNIILQNYPS 273
AVT +ADL+ K ++ N PT + +P +L +++ I L+N S
Sbjct: 355 AVTTPSADLAASKFPTITNTPTATTNTPTIPEGILQAKTPTQQI-TISLENQGS 407
>SB_5197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 27.5 bits (58), Expect = 3.4
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Frame = +1
Query: 7 GPGVEELKTLMKSGE-TPEYILTALVASIAE-AENLEAVTKRNADLSQQKGSSVINLPTF 180
G E++ +K T E+ + E AE + +RNA +S INL T
Sbjct: 690 GAAAEQVNVTVKQKRVTTEHTCKSFDFECLEMAEEVRQGIERNASISDGGEQEEINLDTD 749
Query: 181 LKQSEKVPAEVLDQL--ISNKRLYNIILQNYPSML 279
KQS ++ + + L + + L N + PS++
Sbjct: 750 SKQSRQIANSIFEMLGSVGDAVLNNQLPGEKPSLV 784
>SB_33955| Best HMM Match : SDA1 (HMM E-Value=0.79)
Length = 258
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 89 LQRLKIWKQ*RKEMQIYLSRKA 154
LQR KIW + K++ YL R+A
Sbjct: 54 LQRCKIWSKYAKDIATYLERRA 75
>SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)
Length = 806
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 89 LQRLKIWKQ*RKEMQIYLSRKA 154
LQR KIW + K++ YL R+A
Sbjct: 501 LQRCKIWSKYAKDIATYLERRA 522
>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 754
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -3
Query: 160 LNCLSAEINLHFFSLLLPNFQPLQ-SMPLKP 71
L+ LSA++N H+ S+ P++QP + SM + P
Sbjct: 381 LDVLSADLNNHYNSVGYPSYQPCEFSMCVAP 411
>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -3
Query: 160 LNCLSAEINLHFFSLLLPNFQPLQ-SMPLKP 71
L+ LSA++N H+ S+ P++QP + SM + P
Sbjct: 1662 LDVLSADLNNHYNSVGYPSYQPCEFSMCVAP 1692
>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 166 NLPTFLKQSEKVPAEVLDQLISNKRLYNII 255
N+P FLK + VPA+ + ++ L+N++
Sbjct: 300 NVPLFLKGANWVPADSFEDRVNRSVLHNLL 329
>SB_55977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/46 (21%), Positives = 22/46 (47%)
Frame = -3
Query: 160 LNCLSAEINLHFFSLLLPNFQPLQSMPLKPLEYILVFLHSSSKSSI 23
L C+ E +++ P QP +++PL+ + + +H K +
Sbjct: 37 LGCVDGEYDINLKEGARPTIQPQRNVPLRLFDQLKSTIHDLEKKGV 82
>SB_24642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 26.2 bits (55), Expect = 7.8
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 4 RGPGVEELKTLMKSGETPEYILTALVASIAE-AENLEAVTKRNADL 138
RG G+E +K ++S PE+++ + AE A L+ + N +L
Sbjct: 15 RGLGLEFVKQFLRSKNPPEHLIATCRSLTAESASELKKLAAENQNL 60
>SB_10444| Best HMM Match : Drf_FH1 (HMM E-Value=9.2)
Length = 263
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 91 AEAENLEAVTKRNADLSQQKGSSVINLPTFLKQSEKVP 204
A A+ A+T+ +A ++QQ G+ V + ++++ K+P
Sbjct: 186 AIAKGKSAITENDAAVAQQHGNPVAVMEVAVQENTKIP 223
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 26.2 bits (55), Expect = 7.8
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +1
Query: 121 KRNADLSQQKGSSVINLPTFLKQ---SEKVPAEVLDQLISNKRLYNIILQNYPSMLALRS 291
K A L+ + + + T KQ SEK + DQL +K + +N + A+RS
Sbjct: 1255 KEKAQLTNEGDDLAVTVETLQKQKQASEKNNRAISDQLAESKAQNEELRKNIQELQAIRS 1314
Query: 292 NSE 300
E
Sbjct: 1315 RIE 1317
>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 577
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 154 CLSAEINLHFFSLLLPNFQPL 92
C + I+ H +LLPNF PL
Sbjct: 273 CCNQTIDEHLIDVLLPNFPPL 293
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.308 0.125 0.325
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,649,632
Number of Sequences: 59808
Number of extensions: 184409
Number of successful extensions: 387
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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