Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G03
         (357 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    25   1.1  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   1.5  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    24   2.0  
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    23   4.5  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    22   6.0  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    22   7.9  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    22   7.9  

>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 308 CQWNQWRKPRR 340
           C+WN W K RR
Sbjct: 265 CKWNNWTKQRR 275


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 232 NKRLYNIILQNYPSMLALRSNSEQKLPVE 318
           +KRLY+ +L NY  ++    N+  +L V+
Sbjct: 24  SKRLYDDLLSNYNRLIRPVGNNSDRLTVK 52


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 160 VINLPTFLKQSEKVPAEVLDQLISNKRLYNIILQNYPSMLALRSNSEQK 306
           ++ LP  L    +VP ++L +L +NK  Y I +       AL ++S+ +
Sbjct: 358 ILRLPKLLLM--RVPNDLLKELAANKINYGIKISKSKFGAALAAHSQMQ 404



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 235 KRLYNIILQNYPSMLALRSNSEQKLPVE 318
           KRLY+ +L NY  ++   SN+   + V+
Sbjct: 37  KRLYDDLLSNYNRLIRPVSNNTDTVLVK 64


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 298 EQKLPVEPVAETPKTRAV 351
           E   PV+PV   PKT A+
Sbjct: 255 EHNGPVKPVPRRPKTEAI 272


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 10   PGVEELKTLMKSGETPEYILTALVASIAEAENLEAVTKRNADLSQQ 147
            P  +  +T +  G  PE +L  ++ S     N+   TKR     QQ
Sbjct: 1034 PRFDSTRTELLHGVVPETLLEHMLQSPENWSNVCEATKRITSALQQ 1079


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 235 KRLYNIILQNYPSMLALRSNSEQKLPV 315
           KRLY+ +L NY  ++    N+ + L V
Sbjct: 31  KRLYDDLLSNYNRLIRPVVNNTETLTV 57


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
            chain protein.
          Length = 1024

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 354  LNCSGLRGFRHWFHWQFLFRVTSQSQH 274
            + C+G +G  H++  Q  F + S   H
Sbjct: 969  IECNGGKGHCHYYETQTSFWLVSLEDH 995


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.308    0.125    0.325 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,241
Number of Sequences: 2352
Number of extensions: 6203
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 26224815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)