Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G03
         (357 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ...    33   0.056
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr...    30   0.52 
At3g54850.1 68416.m06077 armadillo/beta-catenin repeat family pr...    29   1.2  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    27   3.7  
At5g27930.2 68418.m03359 protein phosphatase 2C, putative / PP2C...    27   4.9  
At5g27930.1 68418.m03358 protein phosphatase 2C, putative / PP2C...    27   4.9  
At1g36730.1 68414.m04569 eukaryotic translation initiation facto...    27   4.9  
At5g57130.1 68418.m07135 expressed protein                             26   6.4  
At4g31680.1 68417.m04498 transcriptional factor B3 family protei...    26   6.4  
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    26   8.5  
At5g43880.1 68418.m05366 expressed protein                             26   8.5  
At4g31660.1 68417.m04496 transcriptional factor B3 family protei...    26   8.5  
At1g60190.1 68414.m06780 armadillo/beta-catenin repeat family pr...    26   8.5  
At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    26   8.5  

>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 272

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +1

Query: 76  LVASIAEAENLEAVTKRNADLSQQKGSSV 162
           L+A +A  +N EAVTK ++D+ QQK  +V
Sbjct: 150 LIADVAHHDNEEAVTKSDSDVDQQKAKNV 178


>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 654

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 28  KTLMKSGETPEYILTALVASIAEAENLEAVTKRNADLSQQKGSSVINLP 174
           +TL     TP Y+L +L+A   E+  +E   + N      K SS  + P
Sbjct: 302 ETLTSDIMTPNYVLRSLIAQWCESNGIEPPKRPNISQPSSKASSSSSAP 350


>At3g54850.1 68416.m06077 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 632

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 28  KTLMKSGETPEYILTALVASIAEAENLEAVTKRNADLSQQKGSS 159
           +TL+ +G TP Y+L +L+A   E+  +E    + +  + + G S
Sbjct: 294 ETLLHAGLTPNYVLKSLIALWCESNGIELPQNQGSCRTTKIGGS 337


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 7    GPGVEELKTLMKSGETPEYILTALVASIAEAENLEAVTKRNADLSQQKGSSV 162
            GPG   +  L ++ ETPE + T  +A+   A+   A    +    QQKGS +
Sbjct: 2176 GPGEAVVHALERTTETPELVWTPAMAASLSAQ--IATMASDIYREQQKGSVI 2225


>At5g27930.2 68418.m03359 protein phosphatase 2C, putative / PP2C,
           putative protein phosphatase-2C, Mesembryanthemum
           crystallinum, EMBL:AF075581
          Length = 373

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 70  LEYILVFLHSSSKSSIPQH 14
           +  + +FLHSSS SS+ QH
Sbjct: 347 MSVVCLFLHSSSSSSLSQH 365


>At5g27930.1 68418.m03358 protein phosphatase 2C, putative / PP2C,
           putative protein phosphatase-2C, Mesembryanthemum
           crystallinum, EMBL:AF075581
          Length = 373

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 70  LEYILVFLHSSSKSSIPQH 14
           +  + +FLHSSS SS+ QH
Sbjct: 347 MSVVCLFLHSSSSSSLSQH 365


>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
           5, putative / eIF-5, putative similar to SP|P55876
           Eukaryotic translation initiation factor 5 (eIF-5) {Zea
           mays}; contains Pfam profiles PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
           IF2B/IF5
          Length = 439

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 16  VEELKTLMKSGETPEYILTALVASIAE-AENLEAV 117
           V E+K L+ SG +P  + TAL ++ A   E ++A+
Sbjct: 293 VNEIKELLSSGSSPTQLKTALASNSANPQEKMDAL 327


>At5g57130.1 68418.m07135 expressed protein
          Length = 920

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +1

Query: 109 EAVTKRNADLSQQKGSSVINLPTFLKQSEKVPAEVLDQLISNKRLYNII---LQNYPSML 279
           E VT  + +    K +    LP++L+  +   +   D+L+  KR +N     L N    L
Sbjct: 409 ECVTSFDREAKSLKANQDKLLPSWLQSHDADSSSQKDELMGLKRKWNRFCETLHNQTGQL 468

Query: 280 ALRSNSEQKLPVEPVAETPKTRAV 351
           ++  N    LP     E+ K+ ++
Sbjct: 469 SMMGNYPYGLPYGSSHESSKSTSL 492


>At4g31680.1 68417.m04498 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 [Brassica
           oleracea var. botrytis] GI:3170424; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 462

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 136 NLHFFSLLLPNFQPLQSMPLK 74
           N HFF  LLP FQ   ++P+K
Sbjct: 11  NKHFFKPLLPGFQRNLNIPVK 31


>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
           ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF02889:
           Sec63 domain
          Length = 2146

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 109 EAVTKRNADLSQQKGSSVINLPTFLKQSEKVPA 207
           E   KRNADL  +   S  N  + L+ SEK  A
Sbjct: 408 EKKNKRNADLGLESEISEANFSSLLEASEKKTA 440


>At5g43880.1 68418.m05366 expressed protein
          Length = 836

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 298 QSYFSKPTLKGSFAK*YYKGVYLI 227
           +SY SKP LK S +   YK VY I
Sbjct: 108 RSYSSKPRLKRSLSHGEYKNVYEI 131


>At4g31660.1 68417.m04496 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424; contains
           Pfam profile PF02362: B3 DNA binding domain
          Length = 251

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 151 LSAEINLHFFSLLLPNFQPLQSMPLK 74
           L +  N HFF  LLP F    ++P+K
Sbjct: 6   LQSPKNSHFFQPLLPGFDSYLNIPVK 31


>At1g60190.1 68414.m06780 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 686

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +1

Query: 31  TLMKSGETPEYILTALVASIAEAENLEAVTKRNADLSQQKGSSVINLPTFLKQSE--KVP 204
           T  K+G+T   + T LV + +  + +++ +K+N  +  QKG   +++   L   E  K+ 
Sbjct: 318 TCPKTGKT--LVSTVLVDNFSVKQVIQSYSKQNGVVMGQKGKKKVDVAESLAAEEAGKLT 375

Query: 205 AEVL 216
           AE L
Sbjct: 376 AEFL 379


>At1g42470.1 68414.m04897 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (GB:AAB63982) (GI:2276463); contains Pfam
           profile PF02460 Patched family
          Length = 1272

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 90  CRG*KFGSSNEKKCRFISA-ERQFSN*FTHI 179
           C+  KFGSSN +   F+ A  + F   FT I
Sbjct: 145 CKNVKFGSSNSRALDFLGAGAKNFKEWFTFI 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.308    0.125    0.325 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,696,863
Number of Sequences: 28952
Number of extensions: 139462
Number of successful extensions: 299
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)