Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G02
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           26   1.9  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   3.3  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   5.8  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    24   7.7  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    24   7.7  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    24   7.7  

>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 56  LK*ISFDTFNNCTFTELLLVKK 121
           LK ISFDTFNN   T+  L  K
Sbjct: 106 LKRISFDTFNNKAATDFSLTLK 127


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 251 FILLQKHFYQKHSTYLYPLLVVRGGILNTKTSFFTNRTLS*FSIF 117
           ++L  +  YQ +  Y YP+L +   I   KT F+T  ++  FS +
Sbjct: 102 YMLWVEKCYQMNKFYAYPILAILDPI--KKTIFYTVASIISFSCY 144


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 261 KKHFYSTAKTFLPKTFYLPVPSIGSSWRYFKHENFILY 148
           ++ +Y +  T L     L +    +SW Y  HEN + Y
Sbjct: 475 RRSYYFSKYTLLAARSLLAIGVGVTSWNYSIHENGVFY 512


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 302 CPLRFL*VPICCPKKNIFILLQKHFYQKHSTYLYPL 195
           C  +   +PI CP  ++ ++L  H  + +  +L+PL
Sbjct: 314 CKAKVCTLPIECPSCSLVLILSTHLARSYH-HLFPL 348


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 276  WNLQEPQWTGRMRLIAKGEELIMKLEDKTSGELFAKCPIDKY 401
            W L+  ++  R   +  G  +I    DKT    FA+ PI ++
Sbjct: 887  WTLRNGKYKTRELYLMFGRLMIYSRYDKTRNMKFAEKPIPRF 928


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 276  WNLQEPQWTGRMRLIAKGEELIMKLEDKTSGELFAKCPIDKY 401
            W L+  ++  R   +  G  +I    DKT    FA+ PI ++
Sbjct: 887  WTLRNGKYKTRELYLMFGRLMIYSRYDKTRNMKFAEKPIPRF 928


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,734,861
Number of Sequences: 5004
Number of extensions: 35277
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)