Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G02
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0697 + 24372233-24372328,24372523-24372554,24372871-243729...    54   3e-08
10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139     43   8e-05
02_01_0462 + 3332464-3332470,3333606-3335806                           28   2.4  
10_08_0482 + 18218163-18218362,18220388-18220446,18223027-182230...    28   3.2  
01_06_1834 + 40214378-40214563,40214728-40214818,40215006-402150...    27   4.2  

>01_05_0697 +
           24372233-24372328,24372523-24372554,24372871-24372971,
           24373050-24373122,24373267-24373298,24373482-24373651,
           24374029-24374127,24375460-24375855
          Length = 332

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 20/41 (48%), Positives = 33/41 (80%)
 Frame = +3

Query: 261 FRAADWNLQEPQWTGRMRLIAKGEELIMKLEDKTSGELFAK 383
           +RA +WN+ +  W G +++++KGEE I+KLEDK +GEL+A+
Sbjct: 42  YRADEWNVNKWAWEGTLKVVSKGEECIIKLEDKNTGELYAR 82



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 124 ENYESVLLVKNEVFVFKIPPRTTNRGYR 207
           E  E VL    E +V+ IPPR T   YR
Sbjct: 16  EAVELVLFQVAECYVYLIPPRKTAASYR 43


>10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139
          Length = 287

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 15/42 (35%), Positives = 28/42 (66%)
 Frame = +3

Query: 261 FRAADWNLQEPQWTGRMRLIAKGEELIMKLEDKTSGELFAKC 386
           ++  +W   +  W+GR+R+++ G+   ++LED  SG+LFA C
Sbjct: 36  YKCGEWLQSDRIWSGRLRVVSCGDRCEIRLEDPASGDLFAAC 77



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 124 ENYESVLLVKNEVFVFKIPPRTTNRGYR 207
           E +E  LLV  EV V+KIPPRTT+ GY+
Sbjct: 10  EAFEHTLLVVREVSVYKIPPRTTSGGYK 37


>02_01_0462 + 3332464-3332470,3333606-3335806
          Length = 735

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 391 IGHLANSSPLVLSSNFIINSSPFAIRRMR 305
           +G+L N   LVLSSN ++ S P +  RM+
Sbjct: 246 LGNLTNLEELVLSSNRLVGSLPPSFARMQ 274


>10_08_0482 +
           18218163-18218362,18220388-18220446,18223027-18223083,
           18223245-18223279,18223617-18223720,18223870-18223945,
           18224045-18224103,18224183-18224248,18224338-18224421,
           18224503-18224567,18224658-18224740,18224832-18224903,
           18225166-18225306,18225395-18225456,18225539-18225605,
           18225863-18226075
          Length = 480

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +3

Query: 249 KNVFFRAADWNLQEP-QWTGRM 311
           KN+FF   +W  + P  W GRM
Sbjct: 210 KNIFFSLCEWGKENPATWAGRM 231


>01_06_1834 +
           40214378-40214563,40214728-40214818,40215006-40215093,
           40215444-40215695,40215927-40216101,40216243-40216329,
           40216445-40216513,40216638-40216734,40217010-40217092,
           40217373-40217480,40217672-40217793,40217921-40218028,
           40218121-40218194,40218492-40218617,40219655-40219722,
           40219930-40220079,40220164-40220214,40220678-40220734,
           40220824-40220970,40221064-40221155,40221516-40221625,
           40221728-40221791,40221883-40222032,40222554-40222788
          Length = 929

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 306 DLSIAVLVSSNLLP*KKHFYSTAKTFLPKTF 214
           +LS+ V   SNLL    +FY  +K  LPK F
Sbjct: 381 ELSVGVAALSNLLGGIGYFYGQSKIALPKGF 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,007,634
Number of Sequences: 37544
Number of extensions: 185318
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)