Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G02
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15896| Best HMM Match : SH3_1 (HMM E-Value=0.00055)                 34   0.050
SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   4.3  
SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)                    27   7.6  
SB_25962| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)                 26   10.0 
SB_20315| Best HMM Match : RVT_1 (HMM E-Value=1.4e-21)                 26   10.0 
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_53378| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_51865| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_51337| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_37938| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_33164| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)                  26   10.0 

>SB_15896| Best HMM Match : SH3_1 (HMM E-Value=0.00055)
          Length = 300

 Score = 33.9 bits (74), Expect = 0.050
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 335 FFAFRNKTHATCPLRFL*VPICCPKKNIFI 246
           FFAF   +H+T P+R + +PI  PK   FI
Sbjct: 243 FFAFSTDSHSTSPIRHIKLPISSPKNTRFI 272


>SB_40410| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 888

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 20  NKDLIKIFFEVVLK*ISFDTFNNCTFTELLLVKKWKTT 133
           N D +   +EVV    SF TF + T TE +++  W+ T
Sbjct: 452 NGDPVNALYEVV----SFKTFEDGTSTEKVIIGTWRNT 485


>SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)
          Length = 521

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = -1

Query: 139 HSRSFPFFNKQQFCKCTIIKSIKR------NSL*YHFKKYF 35
           H+RS  F   +  C  TIIK+++R      NSL     KYF
Sbjct: 10  HARSLLFVTLKSRCSLTIIKALERLIVENTNSLNSRINKYF 50


>SB_25962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 391 IGHLANS-SPLVLSSNFIINSSPFAIRRMRPVHCGSCKFQSAALKKTFLFYCKNIFTKNI 215
           +GH+ N+     L +N  +N S      +  ++  SC +Q  A+    +   ++     +
Sbjct: 106 LGHIVNNIQAYALKNNMRLNPSKCKEMSVSFLNYDSCSWQPMAVGGNTIDRVQSFKLLGV 165

Query: 214 LLTCTLYW 191
           L++C L W
Sbjct: 166 LISCDLTW 173


>SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)
          Length = 754

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 391 IGHLANS-SPLVLSSNFIINSSPFAIRRMRPVHCGSCKFQSAALKKTFLFYCKNIFTKNI 215
           +GH+ N      L +N  +N S      +  ++  SC +Q  A+    +   ++     +
Sbjct: 476 LGHIVNDIQAYALKNNMRLNPSKCKEMSVSFLNYDSCNWQPMAVGGNTIDRVQSFKLLGV 535

Query: 214 LLTCTLYW 191
           L++C L W
Sbjct: 536 LISCDLTW 543


>SB_20315| Best HMM Match : RVT_1 (HMM E-Value=1.4e-21)
          Length = 479

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 391 IGHLANS-SPLVLSSNFIINSSPFAIRRMRPVHCGSCKFQSAALKKTFLFYCKNIFTKNI 215
           +GH+ N      L +N  +N S      +  ++  SC +Q  A+    +   ++     +
Sbjct: 283 LGHIVNDIQAYALKNNMRLNPSKCKEMSVSFLNYDSCSWQPMAVGGNTIDRVQSFKLLGV 342

Query: 214 LLTCTLYW 191
           L++C L W
Sbjct: 343 LISCDLTW 350


>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +1

Query: 100  RIVAC*KMENYESVLLVKNEVFVFKIPPRTTNRG-YR*VECFW*KCFCSRIKMFFLGQQI 276
            R  +C KM  Y++    K     F   PR  + G Y  V+CF   CFC   K     +  
Sbjct: 1113 RQTSCVKMLEYQA----KARSSSFSYVPRCNSDGSYDDVQCFSGYCFCVD-KKGAQKRGY 1167

Query: 277  GTYKNRNGQVAC 312
            G    RNG + C
Sbjct: 1168 GVNVMRNGPIKC 1179


>SB_53378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 391 IGHLANS-SPLVLSSNFIINSSPFAIRRMRPVHCGSCKFQSAALKKTFLFYCKNIFTKNI 215
           +GH+ N      L +N  +N S      +  ++  SC +Q  A+    +   ++     +
Sbjct: 72  LGHIVNDIQAYALKNNMRLNPSKCKEMSVSFLNYDSCSWQPMAVGGNTIDRVQSFKLLGV 131

Query: 214 LLTCTLYW 191
           L++C L W
Sbjct: 132 LISCDLTW 139


>SB_51865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 391 IGHLANS-SPLVLSSNFIINSSPFAIRRMRPVHCGSCKFQSAALKKTFLFYCKNIFTKNI 215
           +GH+ N      L +N  +N S      +  ++  SC +Q  A+    +   ++     +
Sbjct: 100 LGHIVNDIQAYALKNNMRLNPSKCKEMSVSFLNYDSCSWQPMAVGGNTIDRVQSFKLLGV 159

Query: 214 LLTCTLYW 191
           L++C L W
Sbjct: 160 LISCDLTW 167


>SB_51337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 206 LYPLLVVRGGILNTKTSFFTNRTL 135
           L PL+V+ GGI+    S FT++ L
Sbjct: 231 LTPLMVIAGGIMGKVISVFTSKEL 254


>SB_37938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 391 IGHLANS-SPLVLSSNFIINSSPFAIRRMRPVHCGSCKFQSAALKKTFLFYCKNIFTKNI 215
           +GH+ N      L +N  +N S      +  ++  SC +Q  A+    +   ++     +
Sbjct: 10  LGHIVNDIQAYALKNNMRLNPSKCKEMSVSFLNYDSCSWQPMAVGGNTIDRVQSFKLLGV 69

Query: 214 LLTCTLYW 191
           L++C L W
Sbjct: 70  LISCDLTW 77


>SB_33164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 391 IGHLANS-SPLVLSSNFIINSSPFAIRRMRPVHCGSCKFQSAALKKTFLFYCKNIFTKNI 215
           +GH+ N      L +N  +N S      +  ++  SC +Q  A+    +   ++     +
Sbjct: 33  LGHIVNDIQAYALKNNMRLNPSKCKEMSVSFLNYDSCSWQPMAVGGNTIDRVQSFKLLGV 92

Query: 214 LLTCTLYW 191
           L++C L W
Sbjct: 93  LISCDLTW 100


>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
          Length = 831

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 391 IGHLANS-SPLVLSSNFIINSSPFAIRRMRPVHCGSCKFQSAALKKTFLFYCKNIFTKNI 215
           +GH+ N      L +N  +N S      +  ++  SC +Q  A+    +   ++     +
Sbjct: 213 LGHIVNDIQAYALKNNMRLNPSKCKEMSVSFLNYDSCSWQPMAVGGNTIDRVQSFKLLGV 272

Query: 214 LLTCTLYW 191
           L++C L W
Sbjct: 273 LISCDLTW 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,092,908
Number of Sequences: 59808
Number of extensions: 230785
Number of successful extensions: 544
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)