Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G02
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical ...    68   3e-12
AC024748-3|AAO38567.1|   69|Caenorhabditis elegans Hypothetical ...    52   2e-07
AC024832-1|AAK71408.1|  167|Caenorhabditis elegans Hypothetical ...    30   0.71 
Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family...    27   6.7  
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.3a protein.
          Length = 236

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 28/46 (60%), Positives = 36/46 (78%)
 Frame = +3

Query: 264 RAADWNLQEPQWTGRMRLIAKGEELIMKLEDKTSGELFAKCPIDKY 401
           +AADWNL  P WTGRMRL+A G+ L M+LED  + +L+AKCPID +
Sbjct: 28  KAADWNLDSPAWTGRMRLVAIGKRLEMRLEDGETCDLYAKCPIDAH 73



 Score = 33.5 bits (73), Expect = 0.058
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = +1

Query: 121 MENYESVLLVKNEVFVFKIPPRTTN 195
           M +YE+VL+VK +VFV++IPP  T+
Sbjct: 1   MGDYENVLMVKPKVFVYRIPPIGTS 25


>AC024748-3|AAO38567.1|   69|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.3b protein.
          Length = 69

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 21/31 (67%), Positives = 25/31 (80%)
 Frame = +3

Query: 264 RAADWNLQEPQWTGRMRLIAKGEELIMKLED 356
           +AADWNL  P WTGRMRL+A G+ L M+LED
Sbjct: 28  KAADWNLDSPAWTGRMRLVAIGKRLEMRLED 58



 Score = 33.5 bits (73), Expect = 0.058
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = +1

Query: 121 MENYESVLLVKNEVFVFKIPPRTTN 195
           M +YE+VL+VK +VFV++IPP  T+
Sbjct: 1   MGDYENVLMVKPKVFVYRIPPIGTS 25


>AC024832-1|AAK71408.1|  167|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.4 protein.
          Length = 167

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 233 HFYQKHSTYLYPLLVVRGGILNTKTSFFTNRTL 135
           HF+  HST++  L +   GIL T +SFF + TL
Sbjct: 120 HFFCNHSTFIKILFI---GILMTSSSFFYDSTL 149


>Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical
           protein C12D8.5 protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 395 IYWTFSKQFTTCFILQFHNQFFAFRNKTHATCPL 294
           I W F K F T   +QF    F + NK +   PL
Sbjct: 353 IPWFFVKFFMTVEAMQFERDVFIWSNKKYIKSPL 386


>U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family
           protein 9 protein.
          Length = 623

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 54  Y*SEFLLILLIIVHLQNCCLLKNG 125
           Y    LL+L ++    N CLLKNG
Sbjct: 4   YLGRSLLLLALLAQYSNTCLLKNG 27


>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical
           protein F59F3.1 protein.
          Length = 1227

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 6   RVNNAIKI*SKYFLKWY*SEFLLILLIIVHLQNCCLLKNGKL 131
           +VNNA K     F  W+ +  LLI +I V L  C L  + +L
Sbjct: 756 QVNNAPK--GSLFFYWFLALLLLISIIAVFLLTCKLRASNRL 795


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,571,714
Number of Sequences: 27780
Number of extensions: 196972
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)