Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G02
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   2.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   3.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   6.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 120 FLTSNNSVNVQLLKVSKEIHFSTTS 46
           +LT+NN+ N   L++ +    STTS
Sbjct: 725 YLTTNNTSNNSQLQIPRASLVSTTS 749


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 281 VPICCPKKNIFIL 243
           VP+C PK ++F L
Sbjct: 148 VPVCAPKLHVFDL 160


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 278 PICCPKKNIFILLQKHFYQKH--STYLYPLLVVRGGILNTKTSFFTNRTL 135
           P C    + +  L++HF  KH  S  LY +         TK S  T+++L
Sbjct: 9   PYCRRNFSCYYSLKRHFQDKHEQSDTLY-VCEFCNRRYRTKNSLTTHKSL 57


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 86  NCTFTELLLVKKWKTTR 136
           N  FTEL +   WK+ R
Sbjct: 209 NIEFTELCMKLGWKSAR 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,108
Number of Sequences: 438
Number of extensions: 2279
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)