Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G02
         (403 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58600.1 68416.m06531 expressed protein hypothetical protein ...    51   3e-07
At1g03900.1 68414.m00374 expressed protein                             43   9e-05
At5g61290.1 68418.m07691 flavin-containing monooxygenase family ...    29   1.5  
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro...    27   4.7  
At4g16146.1 68417.m02449 expressed protein                             27   4.7  
At2g43240.1 68415.m05374 nucleotide-sugar transporter family pro...    27   4.7  
At5g19980.1 68418.m02378 integral membrane family protein contai...    27   6.2  
At2g28480.1 68415.m03461 expressed protein contains Pfam profile...    26   8.2  

>At3g58600.1 68416.m06531 expressed protein hypothetical protein
           F21M11.17 - Arabidopsis thaliana, EMBL:AC003027
          Length = 302

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 19/41 (46%), Positives = 33/41 (80%)
 Frame = +3

Query: 261 FRAADWNLQEPQWTGRMRLIAKGEELIMKLEDKTSGELFAK 383
           +RA +W++ +  W G +++++KGEE I+KL DKT+GEL+A+
Sbjct: 56  YRADEWDVNKWAWEGALKVVSKGEECIIKLVDKTTGELYAQ 96


>At1g03900.1 68414.m00374 expressed protein
          Length = 272

 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 15/45 (33%), Positives = 29/45 (64%)
 Frame = +3

Query: 261 FRAADWNLQEPQWTGRMRLIAKGEELIMKLEDKTSGELFAKCPID 395
           ++  +W   +  W+GR+R+++  +   ++LED  SG+LFA C +D
Sbjct: 36  YKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVD 80



 Score = 39.5 bits (88), Expect = 8e-04
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 124 ENYESVLLVKNEVFVFKIPPRTTNRGYR 207
           E +E  LLV  EV V+KIPPRTT+ GY+
Sbjct: 10  ETFEHTLLVVREVSVYKIPPRTTSGGYK 37


>At5g61290.1 68418.m07691 flavin-containing monooxygenase family
           protein / FMO family protein low similarity to FMO3 from
           Homo sapiens [SP|P31513]; contains Pfam profile: PF00743
           Flavin-binding monooxygenase-like; supported by
           full-length cDNA Ceres:14492
          Length = 461

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 135 LVVFHFLTSNNSVNVQLLKVSKEIHFSTTSKNI 37
           +VV     S   ++++L++V+KE+H ST S +I
Sbjct: 216 VVVVGCSMSGQDISIELVEVAKEVHLSTKSLDI 248


>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 755

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 401 VFIYWTFSKQFTTCFILQFHNQFFAFRN 318
           V  + T++    +C +L F NQFF FR+
Sbjct: 53  VLTFRTWTLGLFSCILLAFVNQFFGFRS 80


>At4g16146.1 68417.m02449 expressed protein
          Length = 102

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 246 NKNVFFRAADWNLQEPQWTGRMRLIAKGEELIMKLEDKTSGELFAKCP 389
           +K  FF +ADW L + + +   R IA  E+L  KL+     +L  + P
Sbjct: 41  SKRAFFDSADWALLKQEASIDQRTIAAIEKLRPKLQRTPRKQLSPRRP 88


>At2g43240.1 68415.m05374 nucleotide-sugar transporter family
           protein weak similarity to SP|P78382 CMP-sialic acid
           transporter {Homo sapiens}; contains Pfam profile
           PF04142: Nucleotide-sugar transporter
          Length = 787

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 264 RAADWNLQEPQWTGRMRLIAKGEELIMKLEDKTS 365
           R   W LQ   W   M ++A+G E +MKLE++ S
Sbjct: 730 RTRSWFLQA--WA-EMEMVARGLEKLMKLEERQS 760


>At5g19980.1 68418.m02378 integral membrane family protein contains
           Pfam profile: PF00892 Integral membrane protein; similar
           to LPG2 protein (GI:9998817)  [Leishmania mexicana]
          Length = 341

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -2

Query: 309 CDLSIAVLVSSNLLP*KKHFYSTAKTFLPK--TFYLPVPSIGSSWRYFKHENFILY 148
           C +++ +L  S L+      + TAK FLP    FYL + +  +  R+   + FI++
Sbjct: 53  CTVAVYLLGKSGLINHDPFTWDTAKKFLPAAIVFYLAIFTNTNLLRHANVDTFIVF 108


>At2g28480.1 68415.m03461 expressed protein contains Pfam profile
           PF01985: Uncharacterised protein family; expression
           supported by MPSS
          Length = 372

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 300 SIAVLVSSNLLP*KKHFYSTAKTFLPKT 217
           S  +L+SS LLP  + FY +  TF+  T
Sbjct: 19  SYPLLISSRLLPISQEFYDSTLTFVLPT 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,602,599
Number of Sequences: 28952
Number of extensions: 167810
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)