Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G01
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   1.8  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   7.1  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    24   9.4  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    24   9.4  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 314  YEILIPSAPFNNK*PITDLFVKSAPNTFRKVNFRTACNHF 195
            +E+ +PS   +NK     +FV++ P+ + K N  T  + F
Sbjct: 2224 FEVELPSKEDHNKVYRLGIFVETGPDGYSKTNIVTITSRF 2263


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 43  MYIKCSENLLCTNIKCFIL*IKLTNIY*RINEFRFEK 153
           ++  C  N    N++C I   +  N   R+N F F++
Sbjct: 620 LFTLCFANCESMNVRCLIYVSQTINEIVRVNHFEFQE 656


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 281 Y*KELMELIFHMLTIRNLQESSVR*ISKMSVFTSLLPQ 394
           Y K + +   HM+ + +   S+VR +  MS   S LPQ
Sbjct: 106 YSKPVRKRAIHMIKLWHNDYSNVRGMESMSSLVSRLPQ 143


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 90  TLYICTK*IFTTLYIHNYLLWTPSNSLPS 4
           T YI    IF    +HN  ++ P N LPS
Sbjct: 347 TGYITEGQIFVDRQLHNNAIYPPINVLPS 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,189
Number of Sequences: 5004
Number of extensions: 27638
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)