Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_G01
         (451 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X76400-1|CAA53980.2|  514|Homo sapiens nectin 1 protein.               30   3.2  
BC113471-1|AAI13472.1|  517|Homo sapiens poliovirus receptor-rel...    30   3.2  
BC104948-1|AAI04949.1|  517|Homo sapiens poliovirus receptor-rel...    30   3.2  
AY445578-1|AAR88250.1|  241|Homo sapiens poliovirus receptor-rel...    30   3.2  
AY029539-1|AAK33124.1|  352|Homo sapiens soluble nectin1 gamma p...    30   3.2  
AF252867-1|AAG16648.1|  490|Homo sapiens HVEC cell-cell adhesion...    30   3.2  
AF196774-1|AAG16649.1|  431|Homo sapiens HVEC cell-cell adhesion...    30   3.2  
AF110314-1|AAD04944.1|  458|Homo sapiens herpesvirus immunoglobu...    30   3.2  
AF060231-1|AAC23798.1|  517|Homo sapiens herpesvirus entry prote...    30   3.2  

>X76400-1|CAA53980.2|  514|Homo sapiens nectin 1 protein.
          Length = 514

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 150 LKPKFINSLINISQLNLQNETLYICTK*IFTT 55
           L+P F +  I +S+L L++E +YIC    F T
Sbjct: 97  LRPSFTDGTIRLSRLELEDEGVYICEFATFPT 128


>BC113471-1|AAI13472.1|  517|Homo sapiens poliovirus
           receptor-related 1 (herpesvirus entry mediator C)
           protein.
          Length = 517

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 150 LKPKFINSLINISQLNLQNETLYICTK*IFTT 55
           L+P F +  I +S+L L++E +YIC    F T
Sbjct: 100 LRPSFTDGTIRLSRLELEDEGVYICEFATFPT 131


>BC104948-1|AAI04949.1|  517|Homo sapiens poliovirus
           receptor-related 1 (herpesvirus entry mediator C)
           protein.
          Length = 517

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 150 LKPKFINSLINISQLNLQNETLYICTK*IFTT 55
           L+P F +  I +S+L L++E +YIC    F T
Sbjct: 100 LRPSFTDGTIRLSRLELEDEGVYICEFATFPT 131


>AY445578-1|AAR88250.1|  241|Homo sapiens poliovirus
           receptor-related 1 protein.
          Length = 241

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 150 LKPKFINSLINISQLNLQNETLYICTK*IFTT 55
           L+P F +  I +S+L L++E +YIC    F T
Sbjct: 97  LRPSFTDGTIRLSRLELEDEGVYICEFATFPT 128


>AY029539-1|AAK33124.1|  352|Homo sapiens soluble nectin1 gamma
           protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 150 LKPKFINSLINISQLNLQNETLYICTK*IFTT 55
           L+P F +  I +S+L L++E +YIC    F T
Sbjct: 100 LRPSFTDGTIRLSRLELEDEGVYICEFATFPT 131


>AF252867-1|AAG16648.1|  490|Homo sapiens HVEC cell-cell adhesion
           molecule/herpesvirus receptor protein.
          Length = 490

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 150 LKPKFINSLINISQLNLQNETLYICTK*IFTT 55
           L+P F +  I +S+L L++E +YIC    F T
Sbjct: 73  LRPSFTDGTIRLSRLELEDEGVYICEFATFPT 104


>AF196774-1|AAG16649.1|  431|Homo sapiens HVEC cell-cell adhesion
           molecule/herpesvirus receptor protein.
          Length = 431

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 150 LKPKFINSLINISQLNLQNETLYICTK*IFTT 55
           L+P F +  I +S+L L++E +YIC    F T
Sbjct: 73  LRPSFTDGTIRLSRLELEDEGVYICEFATFPT 104


>AF110314-1|AAD04944.1|  458|Homo sapiens herpesvirus
           immunoglobulin-like receptor HIgR protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 150 LKPKFINSLINISQLNLQNETLYICTK*IFTT 55
           L+P F +  I +S+L L++E +YIC    F T
Sbjct: 100 LRPSFTDGTIRLSRLELEDEGVYICEFATFPT 131


>AF060231-1|AAC23798.1|  517|Homo sapiens herpesvirus entry protein
           C protein.
          Length = 517

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 150 LKPKFINSLINISQLNLQNETLYICTK*IFTT 55
           L+P F +  I +S+L L++E +YIC    F T
Sbjct: 100 LRPSFTDGTIRLSRLELEDEGVYICEFATFPT 131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,234,777
Number of Sequences: 237096
Number of extensions: 863474
Number of successful extensions: 1277
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)