Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F24
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...   154   7e-39
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    27   1.3  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   3.1  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    25   5.4  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    25   7.1  
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.1  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    24   9.4  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    24   9.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    24   9.4  

>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score =  154 bits (373), Expect = 7e-39
 Identities = 68/132 (51%), Positives = 91/132 (68%)
 Frame = +1

Query: 46  FINKRLALWDKYKKDYEEKLAAQPEVSIVVTLPDGKTVEAKAWRTTPYDVAKGISQGLAD 225
           FI  RL L+DK +K+Y+E LA +P   I +TLPDGK ++  +W TTP  +A  IS+GLAD
Sbjct: 22  FIQHRLDLFDKLQKEYKESLATKPREEIDITLPDGKVIKGTSWETTPISIAASISKGLAD 81

Query: 226 STIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQSVFWHSSAHMLGEAMERVYGGCLCY 405
              +A VN E WDL RPLE  C L+L  +++ + + VFWHSSAH+LGEA E  +   LC 
Sbjct: 82  RVTVAIVNGEPWDLTRPLEASCTLKLCDFNDPEGKRVFWHSSAHILGEATELSFHCHLCI 141

Query: 406 GPPIEEGFYYDM 441
           GPP +EGF+Y+M
Sbjct: 142 GPPTDEGFFYEM 153


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 352 LRNAKKHSGHLCYPNAGVPTCNHLRVADPGP 260
           L   KKH   + Y   G+  CN  RV  P P
Sbjct: 144 LAKLKKHGPRISYHGIGIGRCNGNRVLPPYP 174


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 118 EVSIVVTLPDGKTVEAKAWRTTPYDVAKGISQGL 219
           E  I V  PDG  VE + W      +A GI  GL
Sbjct: 107 EKRISVDSPDGTKVEYRVWNPFRSKLAAGILGGL 140


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 88  DYEEKLAAQPEVSIVVTLPDGKTVEAKAWRTTPYDVAKGISQGLADSTIIARVNNEL 258
           DYEE LA   E S++     G+T         P D ++G    L     I   N+E+
Sbjct: 161 DYEEYLAIAKEKSLIPRRSRGRTSSKSLSPPAPQDESQGTEINLKQK--IEEENDEI 215


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 85  KDYEEKLAAQPEVSIVVTLPDGKTVE 162
           +D+E  LA + +V +     DGK++E
Sbjct: 511 QDFEYSLAGKKDVKVPAASTDGKSIE 536


>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 232

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 265 LDRPLEGDCKLELLRWDNTDAQSVF 339
           +DR   G  KLEL  WD T  Q +F
Sbjct: 149 MDR-YHGRYKLELYEWDGTPKQPMF 172


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 82  KKDYEEKLAAQPEVSIVVTLPDGKTVEAKAWRTTPYDVAKGI 207
           KK+  E  A +   +++   P G   E+K W+ +   V K +
Sbjct: 22  KKNGIEHEATKSSETVIEMTPSGPIAESKKWKESIARVVKSV 63


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/49 (22%), Positives = 20/49 (40%)
 Frame = +1

Query: 61  LALWDKYKKDYEEKLAAQPEVSIVVTLPDGKTVEAKAWRTTPYDVAKGI 207
           L +WD  + +   K A + E  +       K +  + +   PYD   G+
Sbjct: 375 LYIWDHLRNELISKSAERKENLMQSVFNSSKQISLRKYELEPYDPIYGL 423


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 1   ARGSGSVSELNPWPEFINKRLALWDKYKKD 90
           A  +G ++E+N   +F NK++  ++K ++D
Sbjct: 437 AHATGKLAEINSERDFQNKKIKDFEKIEQD 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,015,226
Number of Sequences: 5004
Number of extensions: 41556
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)