Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F24
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)          85   3e-17
SB_9929| Best HMM Match : MTS (HMM E-Value=3.5)                        29   1.8  
SB_6737| Best HMM Match : Rib_5-P_isom_A (HMM E-Value=9)               27   7.2  
SB_39002| Best HMM Match : Peptidase_M48 (HMM E-Value=0.14)            27   9.5  

>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 33/39 (84%), Positives = 38/39 (97%)
 Frame = +1

Query: 328 QSVFWHSSAHMLGEAMERVYGGCLCYGPPIEEGFYYDMY 444
           ++VFWHSSAH+LGEAMER YGGCLCYGPPIEEG+YYDM+
Sbjct: 290 RAVFWHSSAHVLGEAMERHYGGCLCYGPPIEEGYYYDMH 328


>SB_9929| Best HMM Match : MTS (HMM E-Value=3.5)
          Length = 573

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +1

Query: 85  KDYEEKLAAQPEVSIVVTLPDGKTVEAKAWRTTPYDVAKGISQ 213
           +D+ + +A  P +  V+   DG+T + KA +T+P D A+ + Q
Sbjct: 417 EDWPQTIAC-PAIPQVIPFSDGETRKRKARKTSPLDDAEALLQ 458


>SB_6737| Best HMM Match : Rib_5-P_isom_A (HMM E-Value=9)
          Length = 249

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +1

Query: 178 TTPYDVAKGISQGLADSTIIARVNNELWDLDRPLEGDCKLELLR 309
           TT  DVAKGI    ++  I A V      LD    G C   L R
Sbjct: 153 TTDADVAKGIIPNFSEDKIAAVVGFNCKKLDLLYTGPCDSALFR 196


>SB_39002| Best HMM Match : Peptidase_M48 (HMM E-Value=0.14)
          Length = 102

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 73  DKYKKDYEEKLAAQPEVSIVVTLPDGKTVEAKAWR 177
           + Y  DYE +L  +    ++ TLP+ +T E +A R
Sbjct: 2   NSYDHDYEFELGTRKLSDVMFTLPNSRTHETEADR 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,423,643
Number of Sequences: 59808
Number of extensions: 329277
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)