Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F24
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...   205   1e-53
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...   205   1e-53
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    29   1.6  
AC025723-7|AAN84833.1|  619|Caenorhabditis elegans C.elegans hom...    29   1.6  
AC025723-6|AAN84834.1|  621|Caenorhabditis elegans C.elegans hom...    29   1.6  
Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z74033-1|CAA98475.2|  460|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z70036-2|CAE17914.1|  155|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U88169-12|AAB42231.1|  419|Caenorhabditis elegans Hypothetical p...    28   3.6  
U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ...    27   6.3  

>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score =  205 bits (500), Expect = 1e-53
 Identities = 85/146 (58%), Positives = 117/146 (80%)
 Frame = +1

Query: 10  SGSVSELNPWPEFINKRLALWDKYKKDYEEKLAAQPEVSIVVTLPDGKTVEAKAWRTTPY 189
           S + +++ PWP FI +R+ LWDK K +Y+ ++AA+    I +TLPDGK  E K WRTTP+
Sbjct: 2   SKAPTDMAPWPAFIEERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPF 61

Query: 190 DVAKGISQGLADSTIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQSVFWHSSAHMLGE 369
           ++A+ IS+GLA++ +IA+VN  +WDLDRP EG+ KLELL++D+ +A+ VFWHSSAH+LGE
Sbjct: 62  EIAERISKGLAEAAVIAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGE 121

Query: 370 AMERVYGGCLCYGPPIEEGFYYDMYY 447
           AMER  GG LCYGPPI+EGFYYDM++
Sbjct: 122 AMERYCGGHLCYGPPIQEGFYYDMWH 147


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score =  205 bits (500), Expect = 1e-53
 Identities = 85/146 (58%), Positives = 117/146 (80%)
 Frame = +1

Query: 10  SGSVSELNPWPEFINKRLALWDKYKKDYEEKLAAQPEVSIVVTLPDGKTVEAKAWRTTPY 189
           S + +++ PWP FI +R+ LWDK K +Y+ ++AA+    I +TLPDGK  E K WRTTP+
Sbjct: 43  SKAPTDMAPWPAFIEERIKLWDKLKAEYDAEIAAKESEPIQITLPDGKIHEGKTWRTTPF 102

Query: 190 DVAKGISQGLADSTIIARVNNELWDLDRPLEGDCKLELLRWDNTDAQSVFWHSSAHMLGE 369
           ++A+ IS+GLA++ +IA+VN  +WDLDRP EG+ KLELL++D+ +A+ VFWHSSAH+LGE
Sbjct: 103 EIAERISKGLAEAAVIAKVNGAVWDLDRPFEGNAKLELLKFDDDEAKQVFWHSSAHVLGE 162

Query: 370 AMERVYGGCLCYGPPIEEGFYYDMYY 447
           AMER  GG LCYGPPI+EGFYYDM++
Sbjct: 163 AMERYCGGHLCYGPPIQEGFYYDMWH 188


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform a protein.
          Length = 1273

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 130 VVTLPDGKTV--EAKAWRTTPYDVAKGISQGLADSTIIARVNNELWDL 267
           +V+LPD K++   A+AW+       K + +       + +VNNEL DL
Sbjct: 92  IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139


>AC025723-7|AAN84833.1|  619|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform b protein.
          Length = 619

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 130 VVTLPDGKTV--EAKAWRTTPYDVAKGISQGLADSTIIARVNNELWDL 267
           +V+LPD K++   A+AW+       K + +       + +VNNEL DL
Sbjct: 92  IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139


>AC025723-6|AAN84834.1|  621|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform c protein.
          Length = 621

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 130 VVTLPDGKTV--EAKAWRTTPYDVAKGISQGLADSTIIARVNNELWDL 267
           +V+LPD K++   A+AW+       K + +       + +VNNEL DL
Sbjct: 92  IVSLPDPKSLLKGAEAWKNDAEKTQKAVEEREELKRQLIKVNNELEDL 139


>Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical
           protein C31A11.5 protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 321 RCPECFLAFLSTYAWGSYGKSVRRLSMLWA 410
           RCP  F+  L  Y   +YGK  R+L + WA
Sbjct: 490 RCPPYFVGILVGYLLATYGK--RKLRLNWA 517


>Z74033-1|CAA98475.2|  460|Caenorhabditis elegans Hypothetical
           protein F38B7.1a protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 237 YDS*VGQALTNSLCNIIWCGSPCFCFNS 154
           +DS +  ALTNS  N I  GSP   F+S
Sbjct: 15  FDSGLSSALTNSTSNSITSGSPPTAFSS 42


>Z70036-2|CAE17914.1|  155|Caenorhabditis elegans Hypothetical
           protein T01B4.3 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 67  LWDKYKKDYEE--KLAAQPEVSIVVTLPDGKT 156
           +W++Y+   +E  K+  +PE  + V LP+ KT
Sbjct: 43  IWEEYQAQKQEPLKVEVEPEAKVEVELPEKKT 74


>U88169-12|AAB42231.1|  419|Caenorhabditis elegans Hypothetical
           protein T03F1.1 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 82  KKDYEEKLAAQPEVSIVVTLPDGKTV 159
           +K+YEEK+A QP V + V +P+ +TV
Sbjct: 322 QKEYEEKVANQP-VDLEVEVPEEETV 346


>U41263-4|AAC24426.4|  779|Caenorhabditis elegans Hypothetical
           protein T19D12.6 protein.
          Length = 779

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 255 LIVDASYDS*VGQALTNSLCNIIWCGSPCFCFNSLPVWQC 136
           +++ ++Y + V +   +  C+   C + C   NS+PV QC
Sbjct: 541 ILMQSTYATNVTECFQDP-CSTFGCPNKCLAHNSMPVCQC 579


>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
           protein F55A12.8 protein.
          Length = 1043

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 88  DYEEKLAAQPEVSIVVTLPDGKTVEAKAWRTTP 186
           D EEK  A P  +++  + DG TVE    R  P
Sbjct: 653 DEEEKAPAPPSKTVIKQVKDGHTVELLEERIEP 685


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,284,876
Number of Sequences: 27780
Number of extensions: 241857
Number of successful extensions: 669
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)