Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F24
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.5  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.0  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   2.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   2.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 180 GSPCFCFNSLPVWQCYHYANFRLGSKFLFIIFLVLI 73
           G P     S PVW+   +  F  G   + ++F V++
Sbjct: 541 GGPLVMVCSAPVWRFQPWGPFTWGGIGVVVLFAVVL 576


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 191 SYGVVLHAFASTVFPSGNV 135
           SYG+ L ++ + +FP G +
Sbjct: 89  SYGLTLPSWTNNIFPKGEL 107


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 191 SYGVVLHAFASTVFPSGNV 135
           SYG+ L ++ + +FP G +
Sbjct: 186 SYGLTLPSWTNNIFPRGEL 204


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 191 SYGVVLHAFASTVFPSGNV 135
           SYG+ L ++ + +FP G +
Sbjct: 201 SYGLTLPSWTNNIFPRGEL 219


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 379 RVYGGCLCYGPPI 417
           R  G CL +GPP+
Sbjct: 429 RFGGSCLIHGPPL 441


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 379 RVYGGCLCYGPPI 417
           R  G CL +GPP+
Sbjct: 429 RFGGSCLIHGPPL 441


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 148 GKTVEAKAWRTTPYDVAKGISQGLADSTIIARVNNELWDLDR 273
           GKTV     +   Y    G S G     II   NN+ W + +
Sbjct: 6   GKTVSYTNKKDESYFDEGGRSYGKGRGFIIQNNNNDDWSVGK 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,242
Number of Sequences: 438
Number of extensions: 2807
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)