Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F23
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 29 0.15
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 27 0.45
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 0.45
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 27 0.59
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 27 0.59
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 26 1.4
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 25 1.8
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 1.8
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 25 2.4
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 25 3.1
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 3.1
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 24 5.5
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 24 5.5
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 23 7.3
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 23 7.3
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 23 9.6
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 29.1 bits (62), Expect = 0.15
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 168 DLSEKRTMVVKGDMHIGGVMLKLTESFGKE 257
++S+ T+ GD HIG ++ K E GKE
Sbjct: 174 EISQVATISANGDTHIGELLAKAMERVGKE 203
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 27.5 bits (58), Expect = 0.45
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 234 LTESFGKEFKKDWSDHALWWPT 299
L SF E KK W+ +LW+ T
Sbjct: 9 LLRSFAAEMKKPWTAESLWYET 30
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 27.5 bits (58), Expect = 0.45
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 120 GEVVGDGSWNLTIYVTDLSEKRTMVVK 200
GE++G+GS++ + T+ S KR +K
Sbjct: 102 GEILGEGSYSTVLTATENSTKREYAIK 128
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 27.1 bits (57), Expect = 0.59
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 58 STNVTILVIKCNRTRKKCWLTEKS*ATDHGIS 153
+ VT VI CN RK WLTE+ D +S
Sbjct: 255 TVTVTQAVIFCNTRRKVDWLTEQLTERDFTVS 286
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 27.1 bits (57), Expect = 0.59
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 67 VTILVIKCNRTRKKCWLTEK 126
+T VI CN RK WLTEK
Sbjct: 260 ITQAVIFCNSRRKVDWLTEK 279
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.8 bits (54), Expect = 1.4
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +3
Query: 126 VVGDGSWNLTIYVTDLSEKRT-----MVVKGDMHIGGVMLKLT 239
VV D S NL + D + +V +GD HIG V+ +T
Sbjct: 1270 VVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIGNVITAMT 1312
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 129 VGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGVML--KLTESFGKEFKK 266
+G G++++++ + GD H+GG +L F +EFK+
Sbjct: 198 LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKR 245
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 22 WTCLIESNARDASTNVTILVIKC 90
W C I+SN +STNV + ++C
Sbjct: 176 WKC-IKSNLNTSSTNVLLSALRC 197
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 25.0 bits (52), Expect = 2.4
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Frame = +3
Query: 9 RAI*VDVFDRIKCSRCFYECDNFSDKV**NS*KM-LADGEVVGDGSWNLTIYVTDLSEKR 185
R + VD ++I C Y N+ + S + + DG+ G W T Y+ E++
Sbjct: 104 RLLGVDAQNKILSHACRYIKKNYDFDIPNCSNSIRVIDGKAEGMYGWLATNYLLKTLEEK 163
Query: 186 TMVVKGDMHIGGVMLKLTESFGKEFKKDWSD 278
G + +GG +++ K++ D
Sbjct: 164 DTSTVGFLDMGGASVQIAFELPPSQLKNYKD 194
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 116 SQHFLRVLLHFITKIVTFVEASRAFDSIK 30
+Q R L+ F+ I F EAS AF+ K
Sbjct: 341 AQQIFRSLVFFLRHIEEFEEASEAFEIYK 369
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 105 KMLADGEVVGDGSWNLTIYVTDLSEKRTMVV 197
++L E +GDG +N I DLS T V+
Sbjct: 690 RLLTSEEQIGDGIYNPFIEDPDLSNSSTAVL 720
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 220 PPMCMSPFTTIVRFSLKSV 164
PP MSPFT V F++ +
Sbjct: 434 PPFLMSPFTGTVLFNMLKI 452
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 129 VGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGVML--KLTESFGKEFKK 266
+G G++++++ + GD H+GG +L F +EFK+
Sbjct: 198 LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKR 245
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 23.4 bits (48), Expect = 7.3
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = -3
Query: 209 HVTFYDHCAFFA*VRNVNCEIP*SVAYDFSVSQHFLRVLLHFITKI 72
H + C F + N+ IP +AY + S + L ++ T I
Sbjct: 94 HKEYLLFCQFLTVIPNIAVLIPCFIAYKITDSHYLLVAIIQSTTAI 139
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 129 VGDGSWNLTIYVTDLSEKRTMVVKGDMHIGG 221
+G G++++++ D + GD H+GG
Sbjct: 230 LGGGTFDVSLLSIDNGVFEVLATSGDTHLGG 260
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 23.0 bits (47), Expect = 9.6
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = +3
Query: 225 MLKLTESFGKEFKKDWSDHALWWP 296
M+ + FG + +DW+ +W P
Sbjct: 190 MITILNVFGYKGDRDWALQCMWMP 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,095
Number of Sequences: 5004
Number of extensions: 22299
Number of successful extensions: 69
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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