Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F23
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0574 + 4243019-4244284 29 0.89
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84... 28 1.6
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 27 2.1
02_01_0355 + 2558792-2558862,2558993-2559099,2559185-2559615,256... 27 2.7
11_06_0018 - 19298562-19299827 27 3.6
06_03_1284 - 28988287-28988922,28989335-28989765,28989850-289899... 27 3.6
03_06_0400 + 33673429-33673560,33674611-33674788,33674933-336751... 26 4.7
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942... 26 4.7
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317... 26 4.7
04_03_0811 - 19909128-19912214 25 8.3
>03_01_0574 + 4243019-4244284
Length = 421
Score = 28.7 bits (61), Expect = 0.89
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 111 LADGEVVGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGV 224
L DG+ + SWN VT+L EK+T + GD + G+
Sbjct: 165 LEDGDYLELVSWNPNWAVTEL-EKKTAALTGDANANGI 201
>02_01_0112 -
839048-839552,839638-839720,839828-839982,840078-840557,
840855-841097,841189-841403,841489-841756,842477-842525
Length = 665
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 129 VGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGVML--KLTESFGKEFKKDWS 275
+G G+++++I D + GD H+GG ++ E F K KK +S
Sbjct: 229 LGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKYS 279
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = +3
Query: 117 DGEVVGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWP 296
DG + GS + T+ DL+ + + + +L L S G+ K+W W P
Sbjct: 126 DGRCLASGSGDTTVRFWDLNTQTPLFTCKGGSLNSCILVLISSVGQSCHKNWVLCIAWSP 185
>02_01_0355 +
2558792-2558862,2558993-2559099,2559185-2559615,
2560100-2560735
Length = 414
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 67 VTILVIKCNRTRKKCWLTEKS*ATDHGIS 153
+T VI N RK WLT+K + DH +S
Sbjct: 280 ITQSVIFVNTRRKVDWLTDKMRSRDHTVS 308
>11_06_0018 - 19298562-19299827
Length = 421
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 111 LADGEVVGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGVML---KLTESFGKEFKKDWSDH 281
L DG+ + SWN VT+L EK+T + GD + + +L+ SF +F +++ +
Sbjct: 165 LEDGDYLELVSWNPNWAVTEL-EKKTAALTGDANANDIASPPGELSLSFPMKFPPNFTSY 223
>06_03_1284 -
28988287-28988922,28989335-28989765,28989850-28989956,
28990066-28990136
Length = 414
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 67 VTILVIKCNRTRKKCWLTEKS*ATDHGIS 153
+T VI N RK WLT+K DH +S
Sbjct: 280 ITQSVIFVNTRRKVDWLTDKMRGRDHTVS 308
>03_06_0400 +
33673429-33673560,33674611-33674788,33674933-33675100,
33675207-33675382,33675508-33675666,33676093-33676230,
33676294-33676355,33676509-33676644,33677174-33677268,
33677520-33677635,33677716-33677845,33677938-33677992,
33678065-33678205
Length = 561
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 123 EVVGDGSWNLTIYVTDLSEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWW 293
EV+ S + Y+ ++ V G + ++LK +E GK + DW+ + L W
Sbjct: 166 EVIAGPSHGINHYMQSGNKSMLPVTLGRVPPSHLVLKDSEVSGKHAQIDWNANKLKW 222
>03_05_0052 -
20293197-20293310,20293938-20294024,20294133-20294270,
20295009-20295128,20295236-20295343,20296053-20296133,
20296216-20296456,20297010-20297305
Length = 394
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 67 VTILVIKCNRTRKKCWLTEKS*ATDHGIS 153
+T VI CN RK WLTE+ + + +S
Sbjct: 270 ITQAVIFCNTKRKVDWLTERMRSNNFTVS 298
>01_06_0020 +
25630728-25631023,25631308-25631548,25631629-25631709,
25632109-25632216,25632329-25632448,25632806-25632943,
25633064-25633150,25633802-25633915
Length = 394
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 67 VTILVIKCNRTRKKCWLTEKS*ATDHGIS 153
+T VI CN RK WLTE+ + + +S
Sbjct: 270 ITQAVIFCNTKRKVDWLTERMRSNNFTVS 298
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 104 LRVLLHFITKIVTFVEASRAFDSIKHVHSYGAPR 3
L+ L+HF K + + + S FDS+KH+H PR
Sbjct: 852 LQSLIHFY-KPLEYNDTSN-FDSLKHLHLEYCPR 883
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,141,101
Number of Sequences: 37544
Number of extensions: 144209
Number of successful extensions: 340
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -