Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F23
         (301 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36075| Best HMM Match : CCD (HMM E-Value=4.3)                       63   4e-11
SB_9942| Best HMM Match : CCD (HMM E-Value=4.3)                        63   4e-11
SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)          27   2.8  
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_36075| Best HMM Match : CCD (HMM E-Value=4.3)
          Length = 146

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 25/52 (48%), Positives = 35/52 (67%)
 Frame = +3

Query: 141 SWNLTIYVTDLSEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWP 296
           +WNL++++T LS ++ + V G  HIG +ML L E  G +   DWSDH LWWP
Sbjct: 9   NWNLSVFITSLSTEKPVEVTGQTHIGKLMLDLVE--GLDISADWSDHGLWWP 58


>SB_9942| Best HMM Match : CCD (HMM E-Value=4.3)
          Length = 146

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 25/52 (48%), Positives = 35/52 (67%)
 Frame = +3

Query: 141 SWNLTIYVTDLSEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHALWWP 296
           +WNL++++T LS ++ + V G  HIG +ML L E  G +   DWSDH LWWP
Sbjct: 9   NWNLSVFITSLSTEKPVEVTGQTHIGKLMLDLVE--GLDISADWSDHGLWWP 58


>SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)
          Length = 375

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 28  CLIE-SNARDASTNVTILVIKCNRTRKKCWLTEK 126
           C++E    R++S      +++C++ + KCW T K
Sbjct: 127 CMMEFEECRNSSNGTCEKMLQCHQEKSKCWKTIK 160


>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 67  VTILVIKCNRTRKKCWLTEK 126
           +T  VI CN  RK  WLTEK
Sbjct: 236 ITQAVIFCNTKRKVDWLTEK 255


>SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 161 RYGLKRKTHNGRKR*HAHWRSYA 229
           +YG K K H+  K   ++WR Y+
Sbjct: 162 KYGGKEKAHDSAKVIQSYWRQYS 184


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 148 FHDPSPTTSPSANIFYEFY 92
           F  P  +T+PS NIF EF+
Sbjct: 934 FTYPETSTTPSKNIFLEFF 952


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,489,138
Number of Sequences: 59808
Number of extensions: 175446
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)