Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F23
         (301 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   0.46 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   0.81 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   2.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   3.3  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 0.46
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 28  CLIESNARDASTNVTILVI 84
           C+I+S A + S N T+L I
Sbjct: 127 CIIQSFAAETSANATVLTI 145


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 0.81
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 180 KRTMVVKGDMHIGGVML 230
           K+  VV+GD+ +GG+M+
Sbjct: 108 KKEAVVEGDLVLGGLMM 124


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 42 KCSRCFYECDNFS 80
          KC +C Y C N S
Sbjct: 18 KCEKCSYSCVNKS 30


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 137 VAYDFSVSQHFLRVLLHFITKIVTFV 60
           + Y+FS+S+H+  +   ++   VT +
Sbjct: 242 IVYEFSISRHYGILHATYVIPAVTMM 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,042
Number of Sequences: 438
Number of extensions: 1524
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)