Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F23
(301 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 27 2.3
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 27 2.3
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 27 2.3
At4g25130.1 68417.m03616 peptide methionine sulfoxide reductase,... 27 3.1
At2g24180.1 68415.m02889 cytochrome P450 family protein 27 3.1
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 26 5.4
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 26 5.4
At5g56310.1 68418.m07028 pentatricopeptide (PPR) repeat-containi... 25 9.4
At2g32900.1 68415.m04033 centromere/kinetochore protein, putativ... 25 9.4
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 67 VTILVIKCNRTRKKCWLTEKS*ATDHGIS 153
+T VI N RK WLT+K + DH +S
Sbjct: 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVS 306
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 67 VTILVIKCNRTRKKCWLTEKS*ATDHGIS 153
+T VI N RK WLT+K + DH +S
Sbjct: 280 ITQSVIFVNTRRKVDWLTDKMRSRDHTVS 308
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 67 VTILVIKCNRTRKKCWLTEKS*ATDHGIS 153
+T VI N RK WLT+K + DH +S
Sbjct: 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVS 306
>At4g25130.1 68417.m03616 peptide methionine sulfoxide reductase,
putative strong similarity to SP|P54151 Peptide
methionine sulfoxide reductase (EC 1.8.4.6) {Brassica
napus}; contains Pfam profile PF01625: Peptide
methionine sulfoxide reductase
Length = 258
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 262 LNSLPKLSVSFSITPPMCMSPFTT 191
LNSL K ++SFS P+C P T+
Sbjct: 20 LNSLSKAALSFSRAKPICPFPQTS 43
>At2g24180.1 68415.m02889 cytochrome P450 family protein
Length = 503
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -1
Query: 256 SLPKLSVSFSITPPMCMSPFTTIVRFSLKSVT*IVRFHDPSPTTSPSANIFYEFYY 89
SL LS+ + + + T+V S ++ +++ HD T P +I F+Y
Sbjct: 59 SLRDLSLKYGPVITVYLGSVRTVVVHSPETAEEVLKLHDSECCTRPKLSITKSFFY 114
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 141 SWNLTIYVTDLSEKRTMVVKGDMHIGGVMLKLTESFGKE 257
S + TIY+TD+S + + M+ G + ++ T +FG E
Sbjct: 389 SHSSTIYLTDVSPEAFKAMMNFMYSGELNMEDTVNFGTE 427
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 141 SWNLTIYVTDLSEKRTMVVKGDMHIGGVMLKLTESFGKE 257
S + TIY+TD+S + + M+ G + ++ T +FG E
Sbjct: 389 SHSSTIYLTDVSPEAFKAMMNFMYSGELNMEDTVNFGTE 427
>At5g56310.1 68418.m07028 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 530
Score = 25.0 bits (52), Expect = 9.4
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -2
Query: 255 LYRNSQSVSA*LRQC--ACHLLRPLCVFRLSP*RK--L*DSMIRRLRLLRQPTFFTSSIT 88
L R++ +V+ + C A HL VF P L ++MIR L LL +P + +IT
Sbjct: 43 LNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAIT 102
Query: 87 LY 82
+Y
Sbjct: 103 VY 104
>At2g32900.1 68415.m04033 centromere/kinetochore protein, putative
(ZW10) identical to centromere/kinetochore protein zw10
homolog SP:O48626 from [Arabidopsis thaliana]
Length = 742
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 83 ITKIVTFVEASRAFDSIKHVHSYG 12
I K+V F+ +S F ++ +HS+G
Sbjct: 303 ILKVVKFICSSLCFGNVTWIHSFG 326
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,514,093
Number of Sequences: 28952
Number of extensions: 116727
Number of successful extensions: 292
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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