Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F22
(373 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 1.6
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 1.6
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 2.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 2.2
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 2.9
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 5.0
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 5.0
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 25 5.0
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 24 6.7
SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo... 24 6.7
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 8.8
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 26.2 bits (55), Expect = 1.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 153 IHADEGGEAGPYTKVQGLLSY 215
+H + G AG Y KV+G + Y
Sbjct: 562 LHKKQSGGAGQYAKVEGYIEY 582
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 1.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 70 PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 159
PT L SA DVR +S + +FH+Y+
Sbjct: 51 PTELKARTSATFDVRSASTSPINASDFHKYS 81
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 2.2
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Frame = +3
Query: 84 LGISTTGRTWKLDSDSEISGVPPI------HADEGGEAGPYTKVQGLLSYPEICAKLINP 245
LG+S G+T+ L S+ GV + +A +G EA P T V+ L S E C K++
Sbjct: 93 LGVSGAGKTYTLFGPSDRPGVAFLALDALFYAIKGREASPQT-VEFLRSQLEKC-KIVEA 150
Query: 246 NQ--NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYED 368
++ G+ P KV + ++ + ++ ++ + N + ++S+ +
Sbjct: 151 SKFLRGEAPLDIKVPN-TEYYASHFPKIEEKNYQYAIYLSFAE 192
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 2.2
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 195 VQGLLSYPEICAKLINPNQNGKRPHLRKVNDP-SKRFGTYAFRLPDDNGEGGF 350
V L+SYP++ ++ + + +LR++N P + F +A P EG F
Sbjct: 1815 VNSLISYPKMNIEVSQSSSDKLLLYLRRLNQPLNPDFYIFAPLFPKPQSEGFF 1867
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 2.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 366 LRKKPRSHLHHYHQEGGRHRS 304
LR + H H YH++ G+++S
Sbjct: 1190 LRVPQKKHKHFYHRDDGKYKS 1210
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 5.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +1
Query: 55 KMVRLPTNLSLVSAPLDVR---GSSIQTVKFPEFHRYTP 162
+++ +P NL+ PL GSS +T + PEF TP
Sbjct: 144 ELIMVPPNLA--GKPLSANSSFGSSAKTFQLPEFDSVTP 180
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 24.6 bits (51), Expect = 5.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 203 TLNFGIRTSFTTLIGVYRWNSGNFTV*IE 117
T F + SFT+ +YRWN N V IE
Sbjct: 140 TFTFSDKPSFTS---IYRWNVTNSNVTIE 165
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 347 ATFTIIIRKAEGIGPKTFARIVDLTKMRTLSVLVGVN 237
A +I+ EGI R+ D+ K ++ S LVG N
Sbjct: 120 AEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPN 156
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 216 PEICAKLINPNQNGKRPHLRKVNDPSKRFGTYAFRLP 326
PE+ + L P ++ L + PS +FG +F P
Sbjct: 66 PEVSSPLAEPYESSSSFRLSLSSPPSSKFGGPSFGTP 102
>SPAC12G12.05c |taf9||transcription initiation factor
Taf9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 163
Score = 24.2 bits (50), Expect = 6.7
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Frame = +1
Query: 43 ITGFKMVRL-PTNLSLVSAPLDVRGSSIQTVKFPEFHRYTPMRVVKLVLIPKFKVY*ATQ 219
I G K VRL LS + P + +Q + F HRYT LI +VY A
Sbjct: 11 IKGPKDVRLIHLILSSLGVPSYSQTVPLQLLTFA--HRYTQQ------LIQDSQVY-AEH 61
Query: 220 KFAPNLLTPTKTESVLIFVRSTILANVLGPMPSAFLM 330
N P E V + V S I + GP P FL+
Sbjct: 62 SRGQN--APISVEDVRLAVASQINHSFTGPPPKEFLL 96
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 23.8 bits (49), Expect = 8.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 329 IRKAEGIGPKTFARIVDLTKM 267
IR G GP+ + VD+TK+
Sbjct: 39 IRSVHGTGPRLSIKYVDVTKL 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,708
Number of Sequences: 5004
Number of extensions: 35582
Number of successful extensions: 110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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