Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F22
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 36 0.013
11_04_0234 + 15187065-15188241,15188316-15188494 33 0.054
10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376 29 0.88
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 1.2
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 29 1.5
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 1.5
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 28 2.0
12_02_0292 + 16979550-16980662,16983249-16983731 27 3.6
05_03_0191 - 9521496-9521921 27 3.6
02_02_0532 + 11227074-11227349,11227567-11227969,11228228-112285... 27 4.7
01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436 27 4.7
05_03_0592 + 15909437-15911002 27 6.2
04_04_0345 - 24542869-24543540,24543725-24543805,24543845-245439... 27 6.2
03_05_0101 - 20803546-20803800,20803907-20804700,20804788-208050... 27 6.2
08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323 26 8.2
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 35.5 bits (78), Expect = 0.013
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +3
Query: 24 NADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQG 203
+A + W+ G P K+V+GI GR+W L + + P+ A + G + G
Sbjct: 260 SASYGVVSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATG 317
Query: 204 LLSYPEI 224
+SY E+
Sbjct: 318 AMSYAEV 324
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 33.5 bits (73), Expect = 0.054
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 9 RDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHADEGGEAGP 185
+D +A + W+ G P KLV+GI GR+W L + D G P A G
Sbjct: 254 KDSHFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAA---GTKQR 310
Query: 186 YTKVQGLLSYPEI 224
+ G+++Y EI
Sbjct: 311 KSNQIGVIAYAEI 323
>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
Length = 746
Score = 29.5 bits (63), Expect = 0.88
Identities = 23/93 (24%), Positives = 37/93 (39%)
Frame = +3
Query: 24 NADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQG 203
N + +IN+W+ T G + + S + G A E G GP ++
Sbjct: 508 NGNGSINWWVNGARSTRDWASGEFVPKSSGAVSSTPSMRGTVCYVAPEYGGGGPLSERCD 567
Query: 204 LLSYPEICAKLINPNQNGKRPHLRKVNDPSKRF 302
+ SY + LI +G+RP L+ P F
Sbjct: 568 IYSYGVLLLVLI----SGRRP-LQVTASPMSEF 595
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 78 LVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSYPEICAK 233
LV+G + T L E+SG+P D GP K+ L++ E+ K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416
>12_01_0433 -
3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +1
Query: 4 RGAILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSIQTVKFPEFH 150
RG +L K PT + VR T S+VSA LD + + T PE H
Sbjct: 541 RGDVLVKQPT-----ENRPVRRSTRKSVVSAMLDKESNGLTTEMMPEAH 584
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 13 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 123
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 28.3 bits (60), Expect = 2.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 360 KKPRSHLHHYHQEGGRHR 307
++P+SH HH+H G R R
Sbjct: 164 QQPQSHHHHHHHSGSRKR 181
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 3.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 71 PQTCPWYQHHWTYVEARFR 127
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 3.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 59 WCAYPQTCPWYQHHWTYVEARFR 127
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
>02_02_0532 +
11227074-11227349,11227567-11227969,11228228-11228506,
11228736-11228838,11228932-11229013,11229260-11229370,
11229621-11229691,11229791-11229803
Length = 445
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 261 RPHLRKVNDPSK-RFGTYAFRLPDDNGEGGFWVSYED 368
R H K D K +F FR G G FW+ +ED
Sbjct: 298 RSHNSKSKDDQKEKFMVSVFRRDAFGGNGYFWLDFED 334
>01_01_1179 - 9393337-9393453,9395175-9395227,9395346-9395436
Length = 86
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 231 KLINPNQNGKRPHLRK 278
K I PN++GK PH+RK
Sbjct: 15 KTIPPNRHGKAPHVRK 30
>05_03_0592 + 15909437-15911002
Length = 521
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 102 GRTWKLDSDSEISGVPPIHADEGGEAGP 185
G +L+ +GVPP+ +EGGE P
Sbjct: 17 GELVELELGERNNGVPPVAEEEGGEPRP 44
>04_04_0345 -
24542869-24543540,24543725-24543805,24543845-24543910,
24543991-24544098,24545101-24545436,24545516-24545586,
24546105-24546252
Length = 493
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 13 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 123
++Y +PT++ + GF +L LSL+ A ++ G+ +
Sbjct: 281 VMYYSPTIVQMAGFTSNKLALLLSLIVAGMNAAGTIV 317
>03_05_0101 -
20803546-20803800,20803907-20804700,20804788-20805042,
20805143-20805263,20805716-20805768,20805979-20806239,
20806734-20806784,20806900-20807148,20807257-20807479,
20807737-20807910
Length = 811
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +3
Query: 153 IHADEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSK 296
+HA++ G+ G + + Y ++C + PNQ + + + ND K
Sbjct: 125 LHANDDGDGGTFALYSLISRYAKVC---LIPNQQAEDELVTRYNDHGK 169
>08_02_1495 + 27526008-27526390,27526462-27526876,27529162-27529323
Length = 319
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 357 KPRSHLHHYHQEGGRHR 307
KPR HH+HQ+ G R
Sbjct: 57 KPRRRRHHHHQQAGMAR 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,379,419
Number of Sequences: 37544
Number of extensions: 247521
Number of successful extensions: 794
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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