Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F22
(373 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 6e-08
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 50 5e-07
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 46 1e-05
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.032
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4) 29 1.6
SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_39949| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 2.8
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 3.7
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 27 3.7
SB_24015| Best HMM Match : I-set (HMM E-Value=2.7e-21) 26 8.5
SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37) 26 8.5
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 26 8.5
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 53.2 bits (122), Expect = 6e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Frame = +3
Query: 12 DPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYT 191
DPL A++ WI G P++K+ LGI GR++ L + ++ P A +GG+ GPYT
Sbjct: 234 DPL-TVTHAVDLWIAGGMPSNKIALGIPLYGRSFTLKTANKTLDAP---ATKGGQ-GPYT 288
Query: 192 KVQGLLSYPEIC 227
K G ++Y EIC
Sbjct: 289 KEAGYIAYFEIC 300
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 50.4 bits (115), Expect = 5e-07
Identities = 27/64 (42%), Positives = 35/64 (54%)
Frame = +3
Query: 36 AINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQGLLSY 215
A YWI GAP K+ LG+ T GR +KL +D G+ A+ G YT+ G L+Y
Sbjct: 354 AAQYWIDKGAPASKIALGLGTYGRAFKL-ADQTRHGL-KAPANGNPTRGQYTREPGFLAY 411
Query: 216 PEIC 227
EIC
Sbjct: 412 YEIC 415
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 45.6 bits (103), Expect = 1e-05
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = +3
Query: 18 LQNADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKV 197
+ N D I+NG P +K+VLG+ T GR + L+S + G +AG YT
Sbjct: 634 MNNRDTWEKPGIRNGMPANKIVLGLGTYGRAFGLES----------AGNNGLDAGKYTGA 683
Query: 198 QGLLSYPEIC--AKLINPNQNGKRPHLRKVND 287
+G L+Y EIC + N K P+ K +D
Sbjct: 684 KGFLAYFEICKMGLTVVENNKAKAPYGYKGHD 715
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 168 GGEAGPYTKVQGLLSYPEICAK 233
G +G YT +G L+Y EIC +
Sbjct: 277 GVHSGKYTDAEGFLAYYEICKR 298
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 34.3 bits (75), Expect = 0.032
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +3
Query: 36 AINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPY 188
A+ YW++ G P K+ LG++ G ++L ++ + P + ++ G + PY
Sbjct: 623 AVKYWMEKGMPCGKIALGMANYGHAFELSDPTKTALGAPANVNK-GRSYPY 672
>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
Length = 184
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 180 GPYTKVQGLLSYPEIC 227
GPYT+ G LSY EIC
Sbjct: 16 GPYTRESGFLSYYEIC 31
>SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 145 FHRYTPMRVVKLVLIPKFKVY*ATQKFAPNLLTPTKTESVLIFVR 279
F RY P+R KL++ ++ TQ P + +++F R
Sbjct: 523 FTRYNPVRYAKLIVFTRYNPVRYTQLMVFTRYNPVRYAQLMVFTR 567
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/57 (21%), Positives = 26/57 (45%)
Frame = +1
Query: 109 RGSSIQTVKFPEFHRYTPMRVVKLVLIPKFKVY*ATQKFAPNLLTPTKTESVLIFVR 279
R + ++ + F RY P+R +L++ ++ TQ P + +++F R
Sbjct: 180 RYNPVRYTQLMVFTRYNPVRYTQLIVFTRYNPVRYTQLIVFTRYNPVRYTQLIVFTR 236
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = +1
Query: 109 RGSSIQTVKFPEFHRYTPMRVVKLVLIPKFKVY*ATQKFAPNLLTPTKTESVLIFVR 279
R + ++ + F RY P+R ++L++ ++ TQ P + +++F R
Sbjct: 152 RYNPVRYAQLMVFTRYNPVRYLQLLVFTRYNPVRYTQLMVFTRYNPVRYTQLIVFTR 208
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +1
Query: 145 FHRYTPMRVVKLVLIPKFKVY*ATQKFAPNLLTPTKTESVLIFVR 279
F RY P+R +L++ ++ TQ P + +++F R
Sbjct: 206 FTRYNPVRYTQLIVFTRYNPVRYTQLIVFTRYNPVRYAQLMVFTR 250
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = +1
Query: 109 RGSSIQTVKFPEFHRYTPMRVVKLVLIPKFKVY*ATQKFAPNLLTPTKTESVLIFVR 279
R + ++ ++ F RY P+R +L++ ++ TQ P + +++F R
Sbjct: 166 RYNPVRYLQLLVFTRYNPVRYTQLMVFTRYNPVRYTQLIVFTRYNPVRYTQLIVFTR 222
>SB_39949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 302 KTFARIVDLTKMRTLSVLVGVNKFGANFWVA 210
K FAR++ T +R + VL+ + FG + W A
Sbjct: 17 KQFARLLIKTPVRIVVVLLSLGLFGVSIWEA 47
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 27.9 bits (59), Expect = 2.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 50 DSKWCAYPQTCPWYQHHWTYVEA 118
D + C+YP T PW WT + +
Sbjct: 80 DERNCSYPTTGPWTTRPWTPISS 102
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.5 bits (58), Expect = 3.7
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Frame = +3
Query: 141 GVPPIHADEG--GEAGPY-----TKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPSKR 299
G P EG G++GP + G+ YP + + +P Q G P V D ++
Sbjct: 321 GAPGFSGIEGLKGQSGPLGDPGDNGIDGISGYPGVPGRKGDPGQKGDPPRFVPVPDHGEK 380
Query: 300 FGTYAFRLPDDNGEGG 347
+ P + GE G
Sbjct: 381 GQSGEPGFPGEIGEAG 396
>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 915
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 96 TTGRTWKLDSDSEISGVPPIHADEGGEAGPYT-KVQGLLSYPEI 224
T G+TW E G+P + A GG A P + + +LS +I
Sbjct: 119 TAGKTWNASCFCEGRGMPLVGAVIGGAASPISLNIANVLSVNDI 162
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 23 KRRRCYKLLDSKWCAYPQTCP 85
K RCY L DSK C P P
Sbjct: 327 KAPRCYNLCDSKTCIIPTKAP 347
>SB_24015| Best HMM Match : I-set (HMM E-Value=2.7e-21)
Length = 609
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 335 IIIRKAEGIGPKTFARIVDLTKMRTLSVLVGVNKFGANFWVA**TLNFGIRTSFTTL 165
+++ I P +I ++K+R + V + + A F A L G+R F TL
Sbjct: 92 VVLDDLHTINPLGTLQIASVSKLRDVGEYVCIARNAAGFGAASLELYIGVRPKFKTL 148
>SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)
Length = 1652
Score = 26.2 bits (55), Expect = 8.5
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Frame = +3
Query: 57 NGAPTHKLVLGISTTGRTWKLDSDSEISGVPP------IHADEGGEAGPYTKVQGL--LS 212
N P+ L+ + R K D D E +PP I D G K L LS
Sbjct: 1556 NQMPSLSLMFNTERSARKKKADEDDESFSLPPENHTFEIRVDTNARQGKKRKKTFLFTLS 1615
Query: 213 YPEICAKLINPNQNGKRPHLRKV 281
+ C L+ Q GK L K+
Sbjct: 1616 IFDDCVHLLQIRQIGKYIRLHKL 1638
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 26.2 bits (55), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 363 RKKPRSHLHHYHQEGGRHR 307
R + R H HH+H+ RHR
Sbjct: 334 RHRHRHHHHHHHEYNRRHR 352
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,672,719
Number of Sequences: 59808
Number of extensions: 277928
Number of successful extensions: 746
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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