Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F22
(373 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 48 2e-06
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 28 1.9
Z81464-2|CAB03859.1| 249|Caenorhabditis elegans Hypothetical pr... 27 4.3
AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical ... 27 4.3
AL024499-4|CAC42317.1| 617|Caenorhabditis elegans Hypothetical ... 27 4.3
AL024499-3|CAA19707.1| 618|Caenorhabditis elegans Hypothetical ... 27 4.3
AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein. 27 4.3
AF031839-1|AAC13675.1| 617|Caenorhabditis elegans GLY6b protein. 27 4.3
AF031838-1|AAC13674.1| 618|Caenorhabditis elegans GLY6a protein. 27 4.3
Z81516-1|CAB04203.1| 521|Caenorhabditis elegans Hypothetical pr... 27 5.7
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 48.0 bits (109), Expect = 2e-06
Identities = 24/73 (32%), Positives = 38/73 (52%)
Frame = +3
Query: 24 NADAAINYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQG 203
N D++ YW Q G P K+++G+ T GR W L++ S I+ P + + Y + G
Sbjct: 277 NVDSSARYWNQKGMPKEKIIVGMPTYGRGWTLNNASAIN---PGTSGSPAKITQYVQEAG 333
Query: 204 LLSYPEICAKLIN 242
+ +Y E C L N
Sbjct: 334 VGAYFEFCEMLAN 346
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 372 QDLRKKPRSHLHHYHQEGGRHRSQNVC*DR*PYEDEDAFRF 250
Q L +PR H+HQE RHR+ + D P + RF
Sbjct: 195 QQLAFRPRHRSSHHHQEPRRHRAPSPDPDYSPPLSRNKVRF 235
>Z81464-2|CAB03859.1| 249|Caenorhabditis elegans Hypothetical
protein C08E8.3 protein.
Length = 249
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = -3
Query: 203 TLNFGIRTSFTTLIG---VYRWNSGNFTV*IELPRTSSGADTKDKFVGRRTIL 54
T N GI + F+++ +++ ++ +FT + + + S DTK F+ + T+L
Sbjct: 45 TTNCGIISIFSSIFNLNPIHKTSTSSFTSKVLIIKVSINTDTKTSFLEKHTML 97
>AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical
protein H38K22.5c protein.
Length = 562
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 252 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDP 371
NG P +K N S+ + DD GEGG VS+ P
Sbjct: 71 NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSHLTP 110
>AL024499-4|CAC42317.1| 617|Caenorhabditis elegans Hypothetical
protein H38K22.5b protein.
Length = 617
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 252 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDP 371
NG P +K N S+ + DD GEGG VS+ P
Sbjct: 71 NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSHLTP 110
>AL024499-3|CAA19707.1| 618|Caenorhabditis elegans Hypothetical
protein H38K22.5a protein.
Length = 618
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 252 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDP 371
NG P +K N S+ + DD GEGG VS+ P
Sbjct: 71 NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSHLTP 110
>AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein.
Length = 562
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 252 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDP 371
NG P +K N S+ + DD GEGG VS+ P
Sbjct: 71 NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSHLTP 110
>AF031839-1|AAC13675.1| 617|Caenorhabditis elegans GLY6b protein.
Length = 617
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 252 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDP 371
NG P +K N S+ + DD GEGG VS+ P
Sbjct: 71 NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSHLTP 110
>AF031838-1|AAC13674.1| 618|Caenorhabditis elegans GLY6a protein.
Length = 618
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 252 NGKRPHLRKVNDPSKRFGTYAFRLPDDNGEGGFWVSYEDP 371
NG P +K N S+ + DD GEGG VS+ P
Sbjct: 71 NGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSHLTP 110
>Z81516-1|CAB04203.1| 521|Caenorhabditis elegans Hypothetical
protein F26H9.2 protein.
Length = 521
Score = 26.6 bits (56), Expect = 5.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 120 DSDSEISGVPPIH--ADEGGEAGPYTKVQGLLSYPEICAKLINPNQNGKRPHLRKVNDPS 293
D +E G ++ AD GE P T Y I AK N +P+LR+ PS
Sbjct: 216 DQSTESEGEEDMNRSADRRGELSPQTSRMLKEGYRRIEAKEPNFTAQPDKPNLRRPGQPS 275
Query: 294 K 296
+
Sbjct: 276 R 276
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,324,667
Number of Sequences: 27780
Number of extensions: 205131
Number of successful extensions: 558
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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