Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_F22
(373 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ468657-1|ABE02558.1| 322|Apis mellifera 1,4,5-trisphosphate r... 25 0.22
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 24 0.50
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 1.2
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 23 1.5
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 21 4.7
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 21 4.7
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 4.7
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 4.7
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 21 4.7
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 21 4.7
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 6.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 6.2
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 6.2
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 20 8.2
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 20 8.2
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 20 8.2
>DQ468657-1|ABE02558.1| 322|Apis mellifera 1,4,5-trisphosphate
receptor protein.
Length = 322
Score = 25.4 bits (53), Expect = 0.22
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 57 NGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADEGGEAGPYTKVQG-LLSYPEICAK 233
+GA K +STT K S ++ PP+HAD+ E Y K+Q L+ ++C +
Sbjct: 222 DGATPRKAPPQLSTTD---KKGSAIDLDIGPPLHADQAEE---YKKIQQILIRMNKLCIQ 275
Query: 234 LINPNQNGKRPHLRKV 281
I Q R H +++
Sbjct: 276 TIG-GQIKPRKHEQRL 290
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 24.2 bits (50), Expect = 0.50
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 39 INYWIQNGAPTHKLVLGIST--TGRTWKLDSDSEISGV 146
+++WI A + ++ LGI+T T T LDS +++ V
Sbjct: 264 VSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKV 301
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.0 bits (47), Expect = 1.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 356 NPEATFTIIIRKAEGIGPKTFARIVDLTKMRTLSV 252
+P T TII + GP T R+ DL + TL V
Sbjct: 962 DPSDTVTIITAEEAPSGPPTSIRVDDLDQ-HTLKV 995
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 22.6 bits (46), Expect = 1.5
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +3
Query: 39 INYWIQNGAPTHKLVLGIST 98
+++WI + A + ++ LGI+T
Sbjct: 261 VSFWINHEATSARVALGITT 280
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.0 bits (42), Expect = 4.7
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +3
Query: 39 INYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPI 155
+++W+ A ++ LG+ TT T + + +PP+
Sbjct: 261 VSFWLDQSAVPARVSLGV-TTLLTMATQTSGINASLPPV 298
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.0 bits (42), Expect = 4.7
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +3
Query: 39 INYWIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPI 155
+++W+ A ++ LG+ TT T + + +PP+
Sbjct: 261 VSFWLDQSAVPARVSLGV-TTLLTMATQTSGINASLPPV 298
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 4.7
Identities = 5/20 (25%), Positives = 13/20 (65%)
Frame = +3
Query: 39 INYWIQNGAPTHKLVLGIST 98
+++W+ A ++ LG++T
Sbjct: 240 VSFWLNRNATPARVALGVTT 259
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 4.7
Identities = 5/20 (25%), Positives = 13/20 (65%)
Frame = +3
Query: 39 INYWIQNGAPTHKLVLGIST 98
+++W+ A ++ LG++T
Sbjct: 240 VSFWLNRNATPARVALGVTT 259
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.0 bits (42), Expect = 4.7
Identities = 5/20 (25%), Positives = 13/20 (65%)
Frame = +3
Query: 39 INYWIQNGAPTHKLVLGIST 98
+++W+ A ++ LG++T
Sbjct: 179 VSFWLNRNATPARVALGVTT 198
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 21.0 bits (42), Expect = 4.7
Identities = 8/30 (26%), Positives = 14/30 (46%)
Frame = +3
Query: 117 LDSDSEISGVPPIHADEGGEAGPYTKVQGL 206
+ D + G+ P+H G GP +G+
Sbjct: 53 IPGDIVLGGLFPVHEKGGASCGPNVYNRGV 82
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 20.6 bits (41), Expect = 6.2
Identities = 6/20 (30%), Positives = 13/20 (65%)
Frame = +3
Query: 39 INYWIQNGAPTHKLVLGIST 98
+++W+ A ++ LGI+T
Sbjct: 233 VSFWLNREATADRVSLGITT 252
Score = 20.2 bits (40), Expect = 8.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 352 QKPPSPLSSGRRK 314
Q PPS SGRR+
Sbjct: 398 QTPPSRKESGRRR 410
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 20.6 bits (41), Expect = 6.2
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -2
Query: 192 WYKDQLHHPHRRVSVELRKFHCLNRASTYVQWC 94
WYKD P EL + + +NR + C
Sbjct: 367 WYKDGRQLPGTGRQSELLRLNGINREDRGMYQC 399
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 20.6 bits (41), Expect = 6.2
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -2
Query: 192 WYKDQLHHPHRRVSVELRKFHCLNRASTYVQWC 94
WYKD P EL + + +NR + C
Sbjct: 367 WYKDGRQLPGTGRQSELLRLNGINREDRGMYQC 399
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 20.2 bits (40), Expect = 8.2
Identities = 6/20 (30%), Positives = 13/20 (65%)
Frame = +3
Query: 39 INYWIQNGAPTHKLVLGIST 98
+++W+ A ++VLG +T
Sbjct: 251 VSFWLHMDASPPRIVLGTNT 270
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 75 CG*AHHFESS 46
C HHFESS
Sbjct: 73 CSDVHHFESS 82
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 20.2 bits (40), Expect = 8.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3
Query: 120 DSDSEISGVPPIHADEG 170
DSD + S P +H+ G
Sbjct: 121 DSDPDPSSEPTVHSQSG 137
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,672
Number of Sequences: 438
Number of extensions: 2437
Number of successful extensions: 18
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 8928360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -