Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_F21
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    27   1.1  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   1.1  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    27   1.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   3.4  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    26   3.4  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   4.5  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   4.5  

>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 103 YIVTRVEEEHLWESKQLGAH 162
           Y +T VEE H+W ++ L AH
Sbjct: 205 YTITDVEELHVWMAQHLDAH 224


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 142 SKQLGAHSPHVLLSTLMFFNTKHFNLVTVEEHMQLSFSHIMKHWKRNP 285
           SK LGA  P+     L  F+T       VE  ++L    ++  WK+ P
Sbjct: 67  SKNLGA--PYTYFFGLHLFSTFMSAYTVVEPRLRLKLDQLLATWKQRP 112


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 7   GDNIFTDPYYEKFTDCLDEVARKFSVLYNDSQYI 108
           GD + T PY ++  + LDE+      +   S YI
Sbjct: 45  GDGLLTVPYVQELVNPLDEIGWSIVQVQTQSSYI 78


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +1

Query: 13   NIFTDPYYEKFTDCLDEVARKFSVLYNDSQYIVTRVEEEHLWESKQLGAHSPHVLLSTLM 192
            +++T     K    L+++ + +S + ++  +    VEE +    K+L        LS   
Sbjct: 1279 HLYTSMVDIKARQHLNDLLKIYSTIDDNLIFSSVFVEEINSISKKRLDEPDFERRLSAFT 1338

Query: 193  FFNTKHFNLVT 225
             FN KHF+L++
Sbjct: 1339 SFNEKHFSLIS 1349


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 100 QYIVTRVEEEHLWESKQLGAHSPHVLLSTLMFFNTKHFNLV 222
           Q+   ++  E L   ++L    PH+LL    FF+ + F+++
Sbjct: 33  QFGTRKITPEQLERFEKLTGKKPHLLLRRGAFFSHRDFDMI 73


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 167  GECAPSCLLSHKCSSSTRVTIY-CESLYK 84
            GE    C +SH CSS  R  ++ C   Y+
Sbjct: 1120 GEMERDCQISHGCSSVLRERLFDCSDAYR 1148


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 26   IHITRSSQTV*T-KLLENFQFCIMIHNIS*LV*KRNTCGKVSNWERIHRMYYCQR*CS 196
            I+I  S++ V   K  +NF++ +  + ++    K N C K+ N+E I R  +  R C+
Sbjct: 930  IYIDESNERVVKGKSKDNFEYFLSGNTVTRK--KDNACFKMMNFEEIERRLWSGRYCT 985


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,843
Number of Sequences: 5004
Number of extensions: 41793
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)